TCM_035571 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_035571 T249947_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.825 0.667
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.825 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY16712 MADF 61 131
EOY16712 MADF 401 473

Links

Other MADF family TFs
Other Theobroma cacao TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29576.m000223 Ricinus communis 29576.m000223 I 0.962
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.952
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.949
TCM_035565 Theobroma cacao TCM_035565 I 0.949
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.947
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.947
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.945
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.944
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.943
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.943
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.942
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.942
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.942
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.941
PK24122.1 Cannabis sativa PK24122.1 I 0.941
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.941
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.940
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.940
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.940
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.940
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.940
Ca_04386 Cicer arietinum Ca_04386 I 0.939
Ca_04385 Cicer arietinum Ca_04385 I 0.939
mgf021983m Mimulus guttatus mgf021983m I 0.939
mgf018892m Mimulus guttatus mgf018892m N 0.938
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.938
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.938
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.936
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.936
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.936
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.935
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.933
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.933
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.933
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.931
Cla007910 Citrullus lanatus Cla007910 I 0.929
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.927
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.925
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.924
Bo6g120870 Brassica oleracea Bo6g120870 I 0.923
Bo6g083690 Brassica oleracea Bo6g083690 I 0.923
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.923
Bra003703 Brassica rapa Bra003703 I 0.923
Bra015716 Brassica rapa Bra015716 I 0.923
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.923
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.923
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.923
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.923
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.923
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.922
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.922
MDP0000156139 Malus domestica MDP0000156139 I 0.922
Cla001992 Citrullus lanatus Cla001992 I 0.920
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.920
Ca_25135 Cicer arietinum Ca_25135 I 0.920
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.918
Pm022572 Prunus mume Pm022572 I 0.918
MDP0000451107 Malus domestica MDP0000451107 I 0.918
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.918
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.918
Bra008285 Brassica rapa Bra008285 I 0.914
PK26613.1 Cannabis sativa PK26613.1 I 0.911
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.910
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.910
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.910
Bra003702 Brassica rapa Bra003702 I 0.908
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.905
Pm022570 Prunus mume Pm022570 I 0.905
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.905
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.905
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.904
F775_26337 Aegilops tauschii F775_26337 I 0.904
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.902
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.902
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.902
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.902
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.902
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.901
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.901
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.900
TCM_001348 Theobroma cacao TCM_001348 I 0.897
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.897
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.897
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.897
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.896
30206.m000769 Ricinus communis 30206.m000769 I 0.895
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.895
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.895
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.894
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.894
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.894
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.894
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.893
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.892
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.891
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.891
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.890
mgf015314m Mimulus guttatus mgf015314m N 0.890
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.889
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.888
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.888
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.887
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.887
OB04G27270 Oryza brachyantha OB04G27270 I 0.887
MDP0000701272 Malus domestica MDP0000701272 I 0.886
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.886
Cla005046 Citrullus lanatus Cla005046 I 0.884
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.884
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.883
Bo2g091240 Brassica oleracea Bo2g091240 I 0.883
Pm024289 Prunus mume Pm024289 I 0.882
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.882
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.882
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.882
OBART04G20290 Oryza barthii OBART04G20290 I 0.882
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.882
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.882
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.882
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.882
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.878
Bra036731 Brassica rapa Bra036731 I 0.878
Bo8g027460 Brassica oleracea Bo8g027460 I 0.878
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.877
mgf004276m Mimulus guttatus mgf004276m I 0.876
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.876
Si012121m.g Setaria italica Si012121m.g I 0.876
TCM_015563 Theobroma cacao TCM_015563 I 0.876
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.876
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.875
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.875
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.875
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.875
MDP0000451038 Malus domestica MDP0000451038 I 0.874
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.874
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.873
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.872
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.870
Si034382m.g Setaria italica Si034382m.g I 0.870
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.869
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.869
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.869
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.869
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.869
F775_24861 Aegilops tauschii F775_24861 N 0.868
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.868
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.867
OBART02G25970 Oryza barthii OBART02G25970 I 0.866
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.866
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.866
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.866
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.866
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.866
Si016578m.g Setaria italica Si016578m.g I 0.865
30068.m002635 Ricinus communis 30068.m002635 I 0.864
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.863
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.863
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.863
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.863
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.861
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.861
OB02G33250 Oryza brachyantha OB02G33250 I 0.860
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.859
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.859
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.856
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.856
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.855
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.855
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.855
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.855
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.855
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.855
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.854
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.853
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.849
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.844
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.843
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.842
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.841
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.840
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.840
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.838
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.836
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.831
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.831
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.830
Bra040010 Brassica rapa Bra040010 I 0.829
Bo6g049430 Brassica oleracea Bo6g049430 I 0.829
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.828
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.825
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.825