AMTR_s00041p00147950 (Amborella trichopoda)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 AMTR_s00041p00147950 T247845_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.896 0.796
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.896 0.796
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN13368 MADF 81 152
ERN13368 MADF 421 491

Links

Other MADF family TFs
Other Amborella trichopoda TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB04G27270 Oryza brachyantha OB04G27270 I 0.957
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.957
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.957
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.955
OBART04G20290 Oryza barthii OBART04G20290 I 0.955
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.955
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.955
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.955
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.955
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.953
MDP0000701272 Malus domestica MDP0000701272 I 0.953
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.952
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.952
Si012121m.g Setaria italica Si012121m.g I 0.952
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.952
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.952
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.951
F775_26337 Aegilops tauschii F775_26337 I 0.951
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.951
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.950
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.950
Pm024289 Prunus mume Pm024289 I 0.950
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.950
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.949
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.949
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.949
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.948
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.948
Cla005046 Citrullus lanatus Cla005046 I 0.948
TCM_015563 Theobroma cacao TCM_015563 I 0.947
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.947
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.946
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.946
MDP0000451038 Malus domestica MDP0000451038 I 0.946
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.945
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.945
Si034382m.g Setaria italica Si034382m.g I 0.944
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.944
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.944
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.943
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.943
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.943
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.943
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.943
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.943
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.942
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.941
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.941
30068.m002635 Ricinus communis 30068.m002635 I 0.941
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.941
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.941
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.941
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.940
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.940
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.937
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.937
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.935
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.935
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.935
OB02G33250 Oryza brachyantha OB02G33250 I 0.934
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.933
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.933
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.931
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.931
OBART02G25970 Oryza barthii OBART02G25970 I 0.931
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.931
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.931
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.931
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.931
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.931
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.931
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.930
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.926
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.925
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.924
mgf004276m Mimulus guttatus mgf004276m I 0.924
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.922
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.920
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.919
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.919
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.919
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.916
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.916
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.916
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.914
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.914
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.912
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.912
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.910
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.910
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.910
29576.m000223 Ricinus communis 29576.m000223 I 0.907
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.907
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.906
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.905
30206.m000769 Ricinus communis 30206.m000769 I 0.905
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.904
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.904
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.904
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.904
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.903
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.903
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.902
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.902
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.901
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.900
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.900
Pm022572 Prunus mume Pm022572 I 0.900
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.899
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.899
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.899
MDP0000156139 Malus domestica MDP0000156139 I 0.899
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.899
Bo6g049430 Brassica oleracea Bo6g049430 I 0.898
Bra040010 Brassica rapa Bra040010 I 0.898
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.898
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.898
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.898
Ca_04386 Cicer arietinum Ca_04386 I 0.897
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.896
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.896
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.895
TCM_035565 Theobroma cacao TCM_035565 I 0.895
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.894
MDP0000451107 Malus domestica MDP0000451107 I 0.894
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.893
mgf021983m Mimulus guttatus mgf021983m I 0.893
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.893
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.893
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.892
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.890
Si016578m.g Setaria italica Si016578m.g I 0.890
TCM_001348 Theobroma cacao TCM_001348 I 0.890
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.889
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.889
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.889
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.888
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.888
mgf018892m Mimulus guttatus mgf018892m N 0.887
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.887
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.887
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.887
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.887
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.885
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.884
TCM_035571 Theobroma cacao TCM_035571 I 0.883
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.882
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.881
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.881
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.881
F775_24861 Aegilops tauschii F775_24861 N 0.880
Pm001889 Prunus mume Pm001889 I 0.879
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.879
Pm022570 Prunus mume Pm022570 I 0.878
Bo6g083690 Brassica oleracea Bo6g083690 I 0.876
Bo6g120870 Brassica oleracea Bo6g120870 I 0.876
Bra003703 Brassica rapa Bra003703 I 0.876
Bra015716 Brassica rapa Bra015716 I 0.876
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.876
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.876
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.876
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.876
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.876
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.876
PK24122.1 Cannabis sativa PK24122.1 I 0.876
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.875
Ca_25135 Cicer arietinum Ca_25135 I 0.873
Cla007910 Citrullus lanatus Cla007910 I 0.872
PK26613.1 Cannabis sativa PK26613.1 I 0.872
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.869
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.868
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.868
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.867
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.867
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.865
Bra008285 Brassica rapa Bra008285 I 0.864
Ca_04385 Cicer arietinum Ca_04385 I 0.864
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.862
Cla001992 Citrullus lanatus Cla001992 I 0.860
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.860
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.858
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.854
Bo8g027460 Brassica oleracea Bo8g027460 I 0.847
Bra036731 Brassica rapa Bra036731 I 0.847
Bo2g091240 Brassica oleracea Bo2g091240 I 0.843
Bra003702 Brassica rapa Bra003702 I 0.837
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.836
mgf015314m Mimulus guttatus mgf015314m N 0.831
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.829
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.828
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.818
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.816
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.816