MLOC_22988 (Hordeum vulgare)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 MLOC_22988 T249440_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.911 0.781
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.939 0.754
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.911 0.781
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.906 0.667
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.822 0.664
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.906 0.667
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MLOC_22988.1 MADF 36 106
MLOC_22988.1 MADF 444 515
MLOC_22988.2 MADF 45 93
MLOC_22988.2 MADF 431 502
MLOC_22988.3 MADF 310 381

Links

Other MADF family TFs
Other Hordeum vulgare TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.971
F775_26337 Aegilops tauschii F775_26337 I 0.970
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.970
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.966
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.963
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.963
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.962
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.960
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.960
OB04G27270 Oryza brachyantha OB04G27270 I 0.959
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.959
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.959
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.959
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.958
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.957
OBART04G20290 Oryza barthii OBART04G20290 I 0.957
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.957
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.957
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.957
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.957
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.957
Pm024289 Prunus mume Pm024289 I 0.957
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.956
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.955
Si012121m.g Setaria italica Si012121m.g I 0.955
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.955
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.955
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.955
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.955
MDP0000122269 Malus domestica MDP0000122269 I 0.955
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.955
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.954
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.954
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.954
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.954
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.954
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.954
MDP0000451038 Malus domestica MDP0000451038 I 0.953
MDP0000701272 Malus domestica MDP0000701272 I 0.952
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.951
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.951
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.951
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.951
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.951
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.951
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.951
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.951
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.951
TCM_015563 Theobroma cacao TCM_015563 I 0.951
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.951
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.951
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.951
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.951
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.951
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.951
PK14727.1 Cannabis sativa PK14727.1 I 0.951
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.950
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.950
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.950
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.950
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.950
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.950
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.949
Cla005046 Citrullus lanatus Cla005046 I 0.949
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.947
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.947
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.946
30068.m002635 Ricinus communis 30068.m002635 I 0.946
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.945
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.943
Si034382m.g Setaria italica Si034382m.g I 0.942
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.940
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.939
PK15172.1 Cannabis sativa PK15172.1 D 0.939
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.938
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.937
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.937
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.937
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.936
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.936
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.935
Bo6g083670 Brassica oleracea Bo6g083670 I 0.934
OBART02G25970 Oryza barthii OBART02G25970 I 0.932
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.932
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.931
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.930
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.929
mgf004276m Mimulus guttatus mgf004276m I 0.929
OB02G33250 Oryza brachyantha OB02G33250 I 0.927
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.926
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.926
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.926
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.926
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.926
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.926
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.926
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.926
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.925
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.925
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.924
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.924
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.922
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.922
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.921
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.918
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.917
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.917
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.916
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.916
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.915
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.914
GSMUA_Achr2G00580_001 Musa acuminata GSMUA_Achr2G00580_001 N 0.914
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.913
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.913
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.912
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.912
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.912
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.911
29576.m000223 Ricinus communis 29576.m000223 I 0.911
Bo6g049430 Brassica oleracea Bo6g049430 I 0.908
Bra040010 Brassica rapa Bra040010 I 0.908
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.908
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.907
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.907
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.906
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.906
OBART02G00380 Oryza barthii OBART02G00380 I 0.906
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.906
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.906
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.906
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.906
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.906
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.906
OS02G0104500 Oryza sativa OS02G0104500 D 0.906
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.906
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.905
MDP0000156139 Malus domestica MDP0000156139 I 0.905
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.904
OB02G10400 Oryza brachyantha OB02G10400 I 0.902
TCM_035565 Theobroma cacao TCM_035565 I 0.902
MDP0000451107 Malus domestica MDP0000451107 I 0.902
TCM_035571 Theobroma cacao TCM_035571 I 0.901
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.901
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.900
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.900
Pm022572 Prunus mume Pm022572 I 0.900
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.900
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.900
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.899
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.899
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.899
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.899
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.898
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.898
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.898
30206.m000769 Ricinus communis 30206.m000769 I 0.898
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.897
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.897
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.897
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.897
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.897
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.896
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.895
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.895
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.895
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.895
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.895
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.895
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.895
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.895
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.893
Bo6g083690 Brassica oleracea Bo6g083690 I 0.892
Bo6g120870 Brassica oleracea Bo6g120870 I 0.892
Bra003703 Brassica rapa Bra003703 I 0.892
Bra015716 Brassica rapa Bra015716 I 0.892
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.892
Ca_04386 Cicer arietinum Ca_04386 I 0.892
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.892
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.892
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.892
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.892
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.891
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.891
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.891
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.891
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.891
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.891
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.891
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.890
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.889
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.889
Si016578m.g Setaria italica Si016578m.g I 0.889
Ca_25135 Cicer arietinum Ca_25135 I 0.889
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.889
mgf018892m Mimulus guttatus mgf018892m N 0.889
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.889
mgf021983m Mimulus guttatus mgf021983m I 0.888
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.888
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.888
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.887
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.887
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.886
TCM_001348 Theobroma cacao TCM_001348 I 0.886
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.886
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.885
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.885
29739.m003611 Ricinus communis 29739.m003611 I 0.885
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.885
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.885
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.884
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.884
PK24122.1 Cannabis sativa PK24122.1 I 0.883
Bra008285 Brassica rapa Bra008285 I 0.882
Ca_04385 Cicer arietinum Ca_04385 I 0.882
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.878
F775_24861 Aegilops tauschii F775_24861 N 0.876
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.876
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.876
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.875
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.874
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.874
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.874
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.873
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.872
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.870
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.870
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.870
Cla001992 Citrullus lanatus Cla001992 I 0.870
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.870
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.870
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.868
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.866
Si033157m.g Setaria italica Si033157m.g I 0.864
Pm022570 Prunus mume Pm022570 I 0.864
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.864
Bra003702 Brassica rapa Bra003702 I 0.863
Bo8g027460 Brassica oleracea Bo8g027460 I 0.859
Bra036731 Brassica rapa Bra036731 I 0.859
Cla007910 Citrullus lanatus Cla007910 I 0.857
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.856
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.854
Pm001889 Prunus mume Pm001889 I 0.848
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.845
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.844
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.844
Bo2g091240 Brassica oleracea Bo2g091240 I 0.841
PK26613.1 Cannabis sativa PK26613.1 I 0.837
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.827
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.822
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.820
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.816
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.815
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.812