PK15172.1 (Cannabis sativa)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 PK15172.1 T251170_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15172.1
M01263_2.00		 Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.873 0.716
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.873 0.716
For this family, TFs with SR scores > 0.812 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01263_2.00 MADF 24 93

DNA Binding Domains

Protein ID Domain From To Sequence
PK15172.1 MADF 24 93

Links

Other MADF family TFs
Other Cannabis sativa TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.959
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.954
MDP0000122269 Malus domestica MDP0000122269 I 0.946
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.946
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.946
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.945
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.941
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.939
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.939
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.938
PK14727.1 Cannabis sativa PK14727.1 I 0.935
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.935
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.933
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.933
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.933
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.933
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.932
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.931
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.927
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.927
Bo6g083670 Brassica oleracea Bo6g083670 I 0.925
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.919
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.916
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.907
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.895
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.887
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.886
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.886
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.886
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.886
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.886
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.886
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.886
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.885
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.885
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.885
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.884
OB02G10400 Oryza brachyantha OB02G10400 I 0.878
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.878
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.877
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.876
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.876
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.874
OS02G0104500 Oryza sativa OS02G0104500 D 0.873
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.873
OBART02G00380 Oryza barthii OBART02G00380 I 0.873
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.873
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.873
29739.m003611 Ricinus communis 29739.m003611 I 0.873
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.873
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.873
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.873
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.873
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.873
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.872
Si033157m.g Setaria italica Si033157m.g I 0.865
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.864
SELMODRAFT_14382 Selaginella moellendorffii SELMODRAFT_14382 I 0.848
SELMODRAFT_24518 Selaginella moellendorffii SELMODRAFT_24518 I 0.848
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.844
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.844
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.844
Bo2g152980 Brassica oleracea Bo2g152980 I 0.843
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.832
30128.m008610 Ricinus communis 30128.m008610 I 0.832
MLOC_25460 Hordeum vulgare MLOC_25460 I 0.831
Bo7g093250 Brassica oleracea Bo7g093250 I 0.829
Bostr.29827s0012 Boechera stricta Bostr.29827s0012 I 0.829
evm.TU.supercontig_126.31 Carica papaya evm.TU.supercontig_126.31 I 0.823
Gorai.010G096900 Gossypium raimondii Gorai.010G096900 I 0.817
AMTR_s00001p00251940 Amborella trichopoda AMTR_s00001p00251940 I 0.812