CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.29827s0012
(
Boechera stricta
)
MADF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF10545 (MADF_DNA_bdg)
IPR006578
Bostr.29827s0012
T250597_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK15172.1
M01263_2.00
Cannabis sativa
NNNGTWAHWN
NWDTWACNNN
PBM
Lambert et al.(2019)
pTH10125
0.829
0.623
For this family, TFs with SR scores >
0.812
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.29827s0012.1.p
MADF
472
543
DGSSLSSPSSKAVPLWERISKKMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKRPLDSRTCPYFHQLTAL
Links
Other
MADF
family TFs
Other
Boechera stricta
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bo7g093250
Brassica oleracea
Bo7g093250
I
0.971
Bo2g152980
Brassica oleracea
Bo2g152980
I
0.968
Bra009994
Brassica rapa
Bra009994
N
0.965
LjSGA_134698.1
Lotus japonicus
LjSGA_134698.1
I
0.914
30128.m008610
Ricinus communis
30128.m008610
I
0.891
Eucgr.D02541
Eucalyptus grandis
Eucgr.D02541
I
0.832
PK15172.1
Cannabis sativa
PK15172.1
D
0.829