Pavir.Ab02437 (Panicum virgatum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Pavir.Ab02437 T250809_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.895 0.691
PK15172.1
M01263_2.00 		Cannabis sativa
NNNGTWAHWN
NWDTWACNNN		 PBM
Lambert et al.(2019)
pTH10125 		0.938 0.743
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.895 0.691
OS02G0104500
M02271_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH8719 		0.863 0.600
OS02G0104500
M02272_2.00 		Oryza sativa
NDGTAAWWHN
NDWWTTACHN		 PBM
Weirauch et al.(2014)
pTH9273 		0.863 0.600
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02437.1.p MADF 106 177
Pavir.Ab02437.1.p MADF 429 502
Pavir.Ab02437.2.p MADF 240 313
Pavir.Ab02437.3.p MADF 11 59
Pavir.Ab02437.3.p Myb 294 354
Pavir.Ab02437.4.p MADF 240 313
Pavir.Ab02437.5.p MADF 11 59
Pavir.Ab02437.5.p Myb 294 354
Pavir.Ab02437.6.p MADF 106 177
Pavir.Ab02437.6.p MADF 429 502

Links

Other MADF family TFs
Other Panicum virgatum TFs

246 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si016578m.g Setaria italica Si016578m.g I 0.958
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.956
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.956
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.955
Pavir.J25029 Panicum virgatum Pavir.J25029 I 0.953
MLOC_14207 Hordeum vulgare MLOC_14207 I 0.951
Traes_1AL_ED83D13D4 Triticum aestivum Traes_1AL_ED83D13D4 I 0.951
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.949
Bo6g083670 Brassica oleracea Bo6g083670 I 0.942
Traes_1DL_772D1D7DF Triticum aestivum Traes_1DL_772D1D7DF I 0.942
evm.TU.supercontig_21.195 Carica papaya evm.TU.supercontig_21.195 I 0.942
MDP0000122269 Malus domestica MDP0000122269 I 0.942
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.942
PK14727.1 Cannabis sativa PK14727.1 I 0.941
BGIOSGA011584 Oryza indica BGIOSGA011584 I 0.940
PK15172.1 Cannabis sativa PK15172.1 D 0.938
Pavir.Ga00673 Panicum virgatum Pavir.Ga00673 I 0.937
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.936
Traes_4DL_DC6A55EEE Triticum aestivum Traes_4DL_DC6A55EEE I 0.934
Eucgr.D02541 Eucalyptus grandis Eucgr.D02541 I 0.934
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.933
ORGLA04G0173400 Oryza glaberrima ORGLA04G0173400 I 0.930
LjSGA_034643.2 Lotus japonicus LjSGA_034643.2 I 0.926
Si034382m.g Setaria italica Si034382m.g I 0.925
Lus10028584.g Linum usitatissimum Lus10028584.g I 0.924
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.923
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.923
Pavir.Ib03751 Panicum virgatum Pavir.Ib03751 I 0.923
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.922
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.922
MDP0000701272 Malus domestica MDP0000701272 I 0.922
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.921
TRIUR3_29570 Triticum urartu TRIUR3_29570 I 0.921
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.920
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.919
OB02G33250 Oryza brachyantha OB02G33250 I 0.919
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.918
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.917
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.916
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.916
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.915
OBART02G25970 Oryza barthii OBART02G25970 I 0.915
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.915
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.915
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.915
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.915
Si012121m.g Setaria italica Si012121m.g I 0.915
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.915
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.914
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.914
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.914
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.914
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.914
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.914
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.914
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.914
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.913
30068.m002635 Ricinus communis 30068.m002635 I 0.912
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.911
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.911
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.911
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.911
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.911
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.911
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.910
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.910
Pm024289 Prunus mume Pm024289 I 0.910
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.909
OB04G27270 Oryza brachyantha OB04G27270 I 0.907
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.907
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.907
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.906
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.905
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.905
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.904
TCM_015563 Theobroma cacao TCM_015563 I 0.904
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.904
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.904
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.903
OBART04G20290 Oryza barthii OBART04G20290 I 0.903
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.903
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.903
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.903
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.903
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.903
Aquca_023_00132 Aquilegia coerulea Aquca_023_00132 I 0.903
MDP0000451038 Malus domestica MDP0000451038 I 0.902
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.902
Bo6g049430 Brassica oleracea Bo6g049430 I 0.899
Bra040010 Brassica rapa Bra040010 I 0.899
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.899
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.899
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.899
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.899
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.899
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.898
F775_26337 Aegilops tauschii F775_26337 I 0.897
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.897
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.897
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.897
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.897
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.896
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.895
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.895
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.895
Cla005046 Citrullus lanatus Cla005046 I 0.894
mgf004276m Mimulus guttatus mgf004276m I 0.894
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.893
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.893
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.893
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.893
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.893
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.893
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.892
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.892
Pm022570 Prunus mume Pm022570 I 0.891
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.890
VIT_04s0008g01850 Vitis vinifera VIT_04s0008g01850 I 0.889
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.887
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.886
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.881
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.881
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.880
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.879
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.879
30206.m000769 Ricinus communis 30206.m000769 I 0.879
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.879
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.878
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.877
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.876
GRMZM2G037128 Zea mays GRMZM2G037128 I 0.876
GSMUA_Achr7G04610_001 Musa acuminata GSMUA_Achr7G04610_001 I 0.876
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.876
Sb04g000520 Sorghum bicolor Sb04g000520 I 0.876
Ciclev10010595m.g Citrus clementina Ciclev10010595m.g I 0.876
orange1.1g009174m.g Citrus sinensis orange1.1g009174m.g I 0.876
Pavir.Aa03569 Panicum virgatum Pavir.Aa03569 I 0.876
Pavir.Ab00054 Panicum virgatum Pavir.Ab00054 I 0.876
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.876
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.875
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.872
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.870
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.870
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.869
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.869
MDP0000156139 Malus domestica MDP0000156139 I 0.869
OB02G10400 Oryza brachyantha OB02G10400 I 0.868
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.867
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.866
TCM_001348 Theobroma cacao TCM_001348 I 0.866
Pm022572 Prunus mume Pm022572 I 0.866
gene15385-v1.0-hybrid Fragaria vesca gene15385-v1.0-hybrid I 0.866
POPTR_0018s05520 Populus trichocarpa POPTR_0018s05520 I 0.865
POPTR_0310s00200 Populus trichocarpa POPTR_0310s00200 I 0.865
TCM_035565 Theobroma cacao TCM_035565 I 0.865
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.865
SapurV1A.0435s0090 Salix purpurea SapurV1A.0435s0090 I 0.865
POPTR_0018s05540 Populus trichocarpa POPTR_0018s05540 I 0.864
PK26613.1 Cannabis sativa PK26613.1 I 0.864
BGIOSGA007300 Oryza indica BGIOSGA007300 I 0.863
GRMZM2G111760 Zea mays GRMZM2G111760 I 0.863
OBART02G00380 Oryza barthii OBART02G00380 I 0.863
OGLUM02G00360 Oryza glumaepatula OGLUM02G00360 I 0.863
OMERI02G09240 Oryza meridionalis OMERI02G09240 I 0.863
ONIVA02G00390 Oryza nivara ONIVA02G00390 I 0.863
OPUNC02G00050 Oryza punctata OPUNC02G00050 I 0.863
ORGLA02G0003500 Oryza glaberrima ORGLA02G0003500 I 0.863
ORUFI02G00410 Oryza rufipogon ORUFI02G00410 I 0.863
OS02G0104500 Oryza sativa OS02G0104500 D 0.863
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.863
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.862
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.862
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.861
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.861
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.860
29576.m000223 Ricinus communis 29576.m000223 I 0.859
MDP0000451107 Malus domestica MDP0000451107 I 0.859
PK24122.1 Cannabis sativa PK24122.1 I 0.859
Cla007910 Citrullus lanatus Cla007910 I 0.856
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.856
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.855
POPTR_0006s23800 Populus trichocarpa POPTR_0006s23800 I 0.855
cassava25125.valid.m1 Manihot esculenta cassava25125.valid.m1 I 0.855
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.855
SapurV1A.0710s0040 Salix purpurea SapurV1A.0710s0040 I 0.855
Bo8g027460 Brassica oleracea Bo8g027460 I 0.854
Bra036731 Brassica rapa Bra036731 I 0.854
LPERR02G00380 Leersia perrieri LPERR02G00380 I 0.853
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.852
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.851
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.850
29739.m003611 Ricinus communis 29739.m003611 I 0.850
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.850
Ca_04385 Cicer arietinum Ca_04385 I 0.849
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.849
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.849
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.848
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.848
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.848
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.848
Bra008285 Brassica rapa Bra008285 I 0.847
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.847
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.847
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.847
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.847
Ca_04386 Cicer arietinum Ca_04386 I 0.847
Bo2g091240 Brassica oleracea Bo2g091240 I 0.846
Bra003702 Brassica rapa Bra003702 I 0.846
F775_24861 Aegilops tauschii F775_24861 N 0.846
mgf021983m Mimulus guttatus mgf021983m I 0.846
TCM_035571 Theobroma cacao TCM_035571 I 0.844
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.842
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.842
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.841
Si033157m.g Setaria italica Si033157m.g I 0.841
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.840
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.840
GSMUA_AchrUn_randomG03020_001 Musa acuminata GSMUA_AchrUn_randomG03020_001 I 0.837
Cla001992 Citrullus lanatus Cla001992 I 0.836
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.836
Bo6g083690 Brassica oleracea Bo6g083690 I 0.835
Bo6g120870 Brassica oleracea Bo6g120870 I 0.835
Bra003703 Brassica rapa Bra003703 I 0.835
Bra015716 Brassica rapa Bra015716 I 0.835
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.835
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.835
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.835
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.835
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.835
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.834
Ca_25135 Cicer arietinum Ca_25135 I 0.834
BRADI3G00697 Brachypodium distachyon BRADI3G00697 I 0.832
Traes_6AS_52AE4A6E2 Triticum aestivum Traes_6AS_52AE4A6E2 I 0.832
TRIUR3_30093 Triticum urartu TRIUR3_30093 I 0.832
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.830
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.829
mgf018892m Mimulus guttatus mgf018892m N 0.829
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.826
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.826
Pm001889 Prunus mume Pm001889 I 0.820
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.820
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.819
GSMUA_Achr1G24120_001 Musa acuminata GSMUA_Achr1G24120_001 I 0.818
LjSGA_134698.1 Lotus japonicus LjSGA_134698.1 I 0.817
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.812