TCM_001348 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_001348 T249933_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.858 0.701
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.858 0.701
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX92393 MADF 55 125
EOX92393 MADF 319 390

Links

Other MADF family TFs
Other Theobroma cacao TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.966
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.964
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.964
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.961
30206.m000769 Ricinus communis 30206.m000769 I 0.956
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.955
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.948
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.945
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.943
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.943
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.942
Cla007910 Citrullus lanatus Cla007910 I 0.940
MDP0000156139 Malus domestica MDP0000156139 I 0.940
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.939
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.937
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.937
Pm022572 Prunus mume Pm022572 I 0.937
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.936
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.935
MDP0000451107 Malus domestica MDP0000451107 I 0.934
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.933
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.933
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.926
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.926
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.926
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.926
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.925
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.924
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.924
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.924
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.924
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.923
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.922
Ca_25135 Cicer arietinum Ca_25135 I 0.922
Ca_04386 Cicer arietinum Ca_04386 I 0.921
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.921
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.921
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.920
Bo6g083690 Brassica oleracea Bo6g083690 I 0.919
Bra003703 Brassica rapa Bra003703 I 0.919
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.919
TCM_035565 Theobroma cacao TCM_035565 I 0.919
Pm022570 Prunus mume Pm022570 I 0.919
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.919
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.919
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.919
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.919
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.919
PK26613.1 Cannabis sativa PK26613.1 I 0.919
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.918
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.917
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.917
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.917
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.917
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.915
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.914
Bo6g120870 Brassica oleracea Bo6g120870 I 0.911
Bra015716 Brassica rapa Bra015716 I 0.911
Cla001992 Citrullus lanatus Cla001992 I 0.911
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.911
Bra008285 Brassica rapa Bra008285 I 0.910
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.910
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.910
29576.m000223 Ricinus communis 29576.m000223 I 0.909
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.907
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.906
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.906
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.906
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.905
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.904
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.904
PK24122.1 Cannabis sativa PK24122.1 I 0.904
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.903
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.903
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.902
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.901
Bo8g027460 Brassica oleracea Bo8g027460 I 0.899
Bo2g091240 Brassica oleracea Bo2g091240 I 0.898
mgf015314m Mimulus guttatus mgf015314m N 0.898
TCM_035571 Theobroma cacao TCM_035571 I 0.897
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.896
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.896
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.896
mgf021983m Mimulus guttatus mgf021983m I 0.895
Bra036731 Brassica rapa Bra036731 I 0.894
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.894
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.894
TCM_015563 Theobroma cacao TCM_015563 I 0.892
Ca_04385 Cicer arietinum Ca_04385 I 0.892
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.891
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.891
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.890
F775_26337 Aegilops tauschii F775_26337 I 0.890
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.890
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.890
OB04G27270 Oryza brachyantha OB04G27270 I 0.888
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.888
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.887
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.887
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.887
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.887
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.887
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.887
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.886
mgf018892m Mimulus guttatus mgf018892m N 0.886
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.886
Pm001889 Prunus mume Pm001889 I 0.885
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.885
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.885
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.885
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.883
OBART04G20290 Oryza barthii OBART04G20290 I 0.883
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.883
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.883
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.883
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.883
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.882
30068.m002635 Ricinus communis 30068.m002635 I 0.882
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.882
MDP0000701272 Malus domestica MDP0000701272 I 0.881
OBART02G25970 Oryza barthii OBART02G25970 I 0.880
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.880
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.880
Cla005046 Citrullus lanatus Cla005046 I 0.880
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.880
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.880
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.880
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.879
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.878
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.878
Pm024289 Prunus mume Pm024289 I 0.878
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.878
Si012121m.g Setaria italica Si012121m.g I 0.877
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.877
Bra003702 Brassica rapa Bra003702 I 0.876
OB02G33250 Oryza brachyantha OB02G33250 I 0.875
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.874
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.874
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.874
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.874
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.873
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.871
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.871
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.871
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.870
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.870
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.870
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.870
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.870
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.870
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.870
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.870
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.870
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.869
MDP0000451038 Malus domestica MDP0000451038 I 0.869
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.868
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.868
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.867
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.867
mgf004276m Mimulus guttatus mgf004276m I 0.867
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.866
Si034382m.g Setaria italica Si034382m.g I 0.865
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.864
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.863
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.862
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.861
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.861
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.860
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.859
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.858
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.858
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.858
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.857
Bo6g049430 Brassica oleracea Bo6g049430 I 0.856
Bra040010 Brassica rapa Bra040010 I 0.856
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.856
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.856
Si016578m.g Setaria italica Si016578m.g I 0.856
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.853
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.845
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.845
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.839
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.838
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.838
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.835
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.835
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.834
F775_24861 Aegilops tauschii F775_24861 N 0.831
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.831
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.828
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.820