Bo6g049430 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo6g049430 T247990_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.968 0.971
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.968 0.971
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g049430.1 MADF 70 141
Bo6g049430.1 MADF 420 492

Links

Other MADF family TFs
Other Brassica oleracea TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra040010 Brassica rapa Bra040010 I 0.971
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.969
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.969
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.968
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.968
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.967
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.937
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.936
Bra036731 Brassica rapa Bra036731 I 0.936
Bo8g027460 Brassica oleracea Bo8g027460 I 0.933
mgf004276m Mimulus guttatus mgf004276m I 0.930
OBART04G20290 Oryza barthii OBART04G20290 I 0.926
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.926
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.926
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.926
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.926
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.926
Si012121m.g Setaria italica Si012121m.g I 0.926
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.926
OB04G27270 Oryza brachyantha OB04G27270 I 0.922
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.922
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.922
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.921
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.919
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.919
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.919
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.918
Cla005046 Citrullus lanatus Cla005046 I 0.917
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.913
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.913
Pm024289 Prunus mume Pm024289 I 0.913
Si034382m.g Setaria italica Si034382m.g I 0.913
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.913
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.913
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.913
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.912
MDP0000451038 Malus domestica MDP0000451038 I 0.912
OB02G33250 Oryza brachyantha OB02G33250 I 0.912
F775_26337 Aegilops tauschii F775_26337 I 0.911
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.911
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.911
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.911
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.909
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.909
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.909
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.909
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.908
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.908
TCM_015563 Theobroma cacao TCM_015563 I 0.908
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.908
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.908
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.908
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.906
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.906
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.904
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.904
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.904
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.904
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.904
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.904
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.903
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.901
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.901
MDP0000701272 Malus domestica MDP0000701272 I 0.901
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.901
OBART02G25970 Oryza barthii OBART02G25970 I 0.901
30068.m002635 Ricinus communis 30068.m002635 I 0.900
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.900
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.900
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.900
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.900
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.899
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.899
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.899
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.899
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.899
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.899
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.898
Pm022570 Prunus mume Pm022570 I 0.898
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.897
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.896
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.894
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.894
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.893
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.892
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.891
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.891
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.889
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.889
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.889
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.887
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.887
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.886
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.885
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.883
Si016578m.g Setaria italica Si016578m.g I 0.883
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.882
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.882
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.881
30206.m000769 Ricinus communis 30206.m000769 I 0.880
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.880
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.879
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.879
MDP0000156139 Malus domestica MDP0000156139 I 0.878
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.876
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.876
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.875
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.874
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.873
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.873
MDP0000451107 Malus domestica MDP0000451107 I 0.872
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.871
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.869
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.865
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.864
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.864
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.864
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.864
TCM_035565 Theobroma cacao TCM_035565 I 0.863
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.861
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.861
Pm022572 Prunus mume Pm022572 I 0.861
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.860
PK24122.1 Cannabis sativa PK24122.1 I 0.858
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.858
Ca_04386 Cicer arietinum Ca_04386 I 0.858
Cla007910 Citrullus lanatus Cla007910 I 0.857
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.857
TCM_001348 Theobroma cacao TCM_001348 I 0.856
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.856
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.856
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.856
Bo2g091240 Brassica oleracea Bo2g091240 I 0.853
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.851
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.849
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.849
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.849
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.849
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.849
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.849
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.849
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.849
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.849
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.849
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.848
Cla001992 Citrullus lanatus Cla001992 I 0.848
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.845
29576.m000223 Ricinus communis 29576.m000223 I 0.845
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.845
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.845
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.844
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.844
Ca_25135 Cicer arietinum Ca_25135 I 0.843
mgf021983m Mimulus guttatus mgf021983m I 0.842
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.841
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.840
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.840
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.839
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.839
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.838
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.838
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.837
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.836
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.836
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.836
Bra015716 Brassica rapa Bra015716 I 0.836
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.836
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.836
Bo6g120870 Brassica oleracea Bo6g120870 I 0.836
Bra003703 Brassica rapa Bra003703 I 0.836
Bo6g083690 Brassica oleracea Bo6g083690 I 0.836
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.835
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.835
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.835
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.834
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.834
PK26613.1 Cannabis sativa PK26613.1 I 0.833
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.831
Bra003702 Brassica rapa Bra003702 I 0.831
TCM_035571 Theobroma cacao TCM_035571 I 0.829
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.828
Ca_04385 Cicer arietinum Ca_04385 I 0.825
Bra008285 Brassica rapa Bra008285 I 0.823
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.819
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.819
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.817
Pm001889 Prunus mume Pm001889 I 0.814
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.814
F775_24861 Aegilops tauschii F775_24861 N 0.814