ORGLA03G0008300 (Oryza glaberrima)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 ORGLA03G0008300 T249591_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.886 0.734
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.886 0.734
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0008300.1 MADF 76 147
ORGLA03G0008300.1 MADF 431 503

Links

Other MADF family TFs
Other Oryza glaberrima TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.968
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.968
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.966
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.965
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.965
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.958
Si034382m.g Setaria italica Si034382m.g I 0.956
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.954
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.950
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.950
F775_26337 Aegilops tauschii F775_26337 I 0.947
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.947
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.947
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.946
OB04G27270 Oryza brachyantha OB04G27270 I 0.946
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.946
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.946
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.945
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.944
OBART04G20290 Oryza barthii OBART04G20290 I 0.944
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.944
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.944
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.944
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.944
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.944
Pm024289 Prunus mume Pm024289 I 0.944
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.944
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.943
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.943
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.943
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.943
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.943
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.942
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.942
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.942
Si012121m.g Setaria italica Si012121m.g I 0.941
Cla005046 Citrullus lanatus Cla005046 I 0.941
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.941
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.941
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.940
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.938
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.938
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.937
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.937
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.937
TCM_015563 Theobroma cacao TCM_015563 I 0.937
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.937
MDP0000451038 Malus domestica MDP0000451038 I 0.936
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.935
OB02G33250 Oryza brachyantha OB02G33250 I 0.935
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.935
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.934
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.934
MDP0000701272 Malus domestica MDP0000701272 I 0.933
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.932
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.932
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.932
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.932
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.932
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.931
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.931
30068.m002635 Ricinus communis 30068.m002635 I 0.930
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.929
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.929
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.929
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.929
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.927
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.927
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.927
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.927
OBART02G25970 Oryza barthii OBART02G25970 I 0.926
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.926
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.926
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.923
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.920
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.920
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.918
Si016578m.g Setaria italica Si016578m.g I 0.918
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.917
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.915
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.914
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.914
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.912
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.911
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.911
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.909
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.908
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.908
29576.m000223 Ricinus communis 29576.m000223 I 0.907
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.907
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.907
mgf004276m Mimulus guttatus mgf004276m I 0.902
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.901
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.900
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.900
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.899
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.899
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.899
TCM_035571 Theobroma cacao TCM_035571 I 0.897
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.896
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.896
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.896
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.895
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.894
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.894
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.893
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.893
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.893
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.892
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.890
Bo6g049430 Brassica oleracea Bo6g049430 I 0.889
Bra040010 Brassica rapa Bra040010 I 0.889
Ca_04386 Cicer arietinum Ca_04386 I 0.887
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.887
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.887
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.887
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.886
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.886
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.886
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.886
PK26613.1 Cannabis sativa PK26613.1 I 0.886
Cla007910 Citrullus lanatus Cla007910 I 0.885
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.885
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.884
Pm022572 Prunus mume Pm022572 I 0.884
Bra008285 Brassica rapa Bra008285 I 0.883
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.883
Ca_04385 Cicer arietinum Ca_04385 I 0.883
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.883
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.882
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.881
MDP0000156139 Malus domestica MDP0000156139 I 0.881
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.880
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.879
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.879
Pm022570 Prunus mume Pm022570 I 0.878
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.878
mgf021983m Mimulus guttatus mgf021983m I 0.878
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.878
F775_24861 Aegilops tauschii F775_24861 N 0.877
TCM_035565 Theobroma cacao TCM_035565 I 0.877
mgf018892m Mimulus guttatus mgf018892m N 0.877
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.877
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.877
MDP0000451107 Malus domestica MDP0000451107 I 0.876
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.876
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.876
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.876
Bo6g083690 Brassica oleracea Bo6g083690 I 0.875
Bo6g120870 Brassica oleracea Bo6g120870 I 0.875
Bra015716 Brassica rapa Bra015716 I 0.875
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.875
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.875
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.875
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.875
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.875
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.875
Bra003703 Brassica rapa Bra003703 I 0.874
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.874
TCM_001348 Theobroma cacao TCM_001348 I 0.874
30206.m000769 Ricinus communis 30206.m000769 I 0.873
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.871
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.871
PK24122.1 Cannabis sativa PK24122.1 I 0.865
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.864
Ca_25135 Cicer arietinum Ca_25135 I 0.863
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.860
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.859
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.859
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.857
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.854
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.854
Pm001889 Prunus mume Pm001889 I 0.850
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.850
Cla001992 Citrullus lanatus Cla001992 I 0.849
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.849
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.847
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.844
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.844
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.843
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.842
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.842
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.841
Bo8g027460 Brassica oleracea Bo8g027460 I 0.834
Bra036731 Brassica rapa Bra036731 I 0.834
Bo2g091240 Brassica oleracea Bo2g091240 I 0.830
mgf015314m Mimulus guttatus mgf015314m N 0.826
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.822
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.819
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.819
Bra003702 Brassica rapa Bra003702 I 0.816