Ciclev10000593m.g (Citrus clementina)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Ciclev10000593m.g T250636_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.843 0.730
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.830 0.672
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.830 0.672
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10000593m MADF 84 153
Ciclev10000593m MADF 461 533

Links

Other MADF family TFs
Other Citrus clementina TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.971
TCM_035565 Theobroma cacao TCM_035565 I 0.956
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.953
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.952
29576.m000223 Ricinus communis 29576.m000223 I 0.952
PK24122.1 Cannabis sativa PK24122.1 I 0.952
Ca_04386 Cicer arietinum Ca_04386 I 0.951
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.950
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.950
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.948
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.947
TCM_035571 Theobroma cacao TCM_035571 I 0.947
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.946
Cla001992 Citrullus lanatus Cla001992 I 0.946
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.946
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.946
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.946
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.945
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.944
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.944
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.944
mgf021983m Mimulus guttatus mgf021983m I 0.943
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.942
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.941
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.940
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.940
Bo6g083690 Brassica oleracea Bo6g083690 I 0.939
Bra003703 Brassica rapa Bra003703 I 0.939
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.939
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.939
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.939
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.939
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.939
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.938
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.938
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.938
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.938
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.937
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.937
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.937
mgf018892m Mimulus guttatus mgf018892m N 0.936
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.935
Pm022572 Prunus mume Pm022572 I 0.935
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.935
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.935
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.934
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.934
Bo6g120870 Brassica oleracea Bo6g120870 I 0.933
Bra008285 Brassica rapa Bra008285 I 0.933
Bra015716 Brassica rapa Bra015716 I 0.933
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.933
MDP0000156139 Malus domestica MDP0000156139 I 0.933
Ca_25135 Cicer arietinum Ca_25135 I 0.932
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.930
MDP0000451107 Malus domestica MDP0000451107 I 0.930
Ca_04385 Cicer arietinum Ca_04385 I 0.927
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.927
Bra003702 Brassica rapa Bra003702 I 0.926
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.925
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.925
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.925
PK26613.1 Cannabis sativa PK26613.1 I 0.923
Cla007910 Citrullus lanatus Cla007910 I 0.920
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.916
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.908
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.907
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.906
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.906
TCM_001348 Theobroma cacao TCM_001348 I 0.903
Bo2g091240 Brassica oleracea Bo2g091240 I 0.902
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.902
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.900
OB04G27270 Oryza brachyantha OB04G27270 I 0.898
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.898
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.898
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.898
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.894
F775_26337 Aegilops tauschii F775_26337 I 0.894
OBART04G20290 Oryza barthii OBART04G20290 I 0.894
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.894
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.894
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.894
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.894
30206.m000769 Ricinus communis 30206.m000769 I 0.894
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.893
Pm022570 Prunus mume Pm022570 I 0.893
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.893
MDP0000701272 Malus domestica MDP0000701272 I 0.893
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.893
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.892
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.892
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.892
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.892
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.892
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.892
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.892
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.891
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.890
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.890
TCM_015563 Theobroma cacao TCM_015563 I 0.889
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.889
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.888
Si012121m.g Setaria italica Si012121m.g I 0.888
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.888
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.888
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.888
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.887
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.887
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.887
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.887
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.886
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.886
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.886
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.886
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.886
OBART02G25970 Oryza barthii OBART02G25970 I 0.883
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.883
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.883
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.883
Pm024289 Prunus mume Pm024289 I 0.883
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.883
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.883
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.883
Bo8g027460 Brassica oleracea Bo8g027460 I 0.882
Bra036731 Brassica rapa Bra036731 I 0.882
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.882
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.882
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.880
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.880
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.880
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.879
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.879
OB02G33250 Oryza brachyantha OB02G33250 I 0.878
30068.m002635 Ricinus communis 30068.m002635 I 0.878
mgf015314m Mimulus guttatus mgf015314m N 0.878
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.877
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.877
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.877
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.876
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.876
Cla005046 Citrullus lanatus Cla005046 I 0.876
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.875
Si034382m.g Setaria italica Si034382m.g I 0.874
mgf004276m Mimulus guttatus mgf004276m I 0.874
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.874
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.874
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.873
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.873
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.873
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.873
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.873
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.870
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.870
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.870
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.869
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.869
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.869
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.869
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.868
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.867
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.865
MDP0000451038 Malus domestica MDP0000451038 I 0.865
F775_24861 Aegilops tauschii F775_24861 N 0.863
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.860
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.860
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.860
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.859
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.857
Si016578m.g Setaria italica Si016578m.g I 0.856
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.856
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.853
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.849
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.848
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.845
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.843
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.843
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.841
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.839
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.835
Bo6g049430 Brassica oleracea Bo6g049430 I 0.834
Bra040010 Brassica rapa Bra040010 I 0.834
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.833
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.833
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.830
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.830
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.824
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.818
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.815
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.815