OGLUM04G20210 (Oryza glumaepatula)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 OGLUM04G20210 T249546_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.920 0.787
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.920 0.787
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM04G20210.1 MADF 112 183
OGLUM04G20210.1 MADF 506 575
OGLUM04G20210.2 MADF 112 183
OGLUM04G20210.2 MADF 506 575
OGLUM04G20210.3 MADF 112 183
OGLUM04G20210.3 MADF 506 575

Links

Other MADF family TFs
Other Oryza glumaepatula TFs

194 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.971
OBART04G20290 Oryza barthii OBART04G20290 I 0.971
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.971
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.971
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.970
OB04G27270 Oryza brachyantha OB04G27270 I 0.968
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.967
Si012121m.g Setaria italica Si012121m.g I 0.967
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.964
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.964
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.964
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.963
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.963
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.961
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.961
Pm024289 Prunus mume Pm024289 I 0.961
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.961
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.960
F775_26337 Aegilops tauschii F775_26337 I 0.959
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.959
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.957
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.957
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.957
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.957
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.957
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.956
TCM_015563 Theobroma cacao TCM_015563 I 0.956
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.955
MDP0000451038 Malus domestica MDP0000451038 I 0.955
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.954
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.954
Cla005046 Citrullus lanatus Cla005046 I 0.954
MDP0000701272 Malus domestica MDP0000701272 I 0.954
Si034382m.g Setaria italica Si034382m.g I 0.953
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.953
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.952
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.952
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.951
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.951
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.951
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.951
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.951
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.951
30068.m002635 Ricinus communis 30068.m002635 I 0.951
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.951
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.951
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.951
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.951
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.950
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.950
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.950
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.949
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.948
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.948
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.947
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.947
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.947
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.945
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.944
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.942
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.942
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.942
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.941
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.941
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.940
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.940
OB02G33250 Oryza brachyantha OB02G33250 I 0.939
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.936
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.936
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.936
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.936
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.935
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.935
OBART02G25970 Oryza barthii OBART02G25970 I 0.931
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.931
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.930
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.929
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.927
mgf004276m Mimulus guttatus mgf004276m I 0.927
Bo6g049430 Brassica oleracea Bo6g049430 I 0.926
Bra040010 Brassica rapa Bra040010 I 0.926
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.926
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.925
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.923
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.923
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.922
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.922
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.921
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.920
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.920
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.916
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.915
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.914
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.914
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.913
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.909
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.909
Pm022572 Prunus mume Pm022572 I 0.909
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.909
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.908
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.907
MDP0000156139 Malus domestica MDP0000156139 I 0.906
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.905
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.904
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.904
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.904
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.903
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.902
MDP0000451107 Malus domestica MDP0000451107 I 0.902
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.901
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.900
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.899
mgf021983m Mimulus guttatus mgf021983m I 0.897
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.896
30206.m000769 Ricinus communis 30206.m000769 I 0.896
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.896
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.896
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.895
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.894
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.894
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.894
TCM_035565 Theobroma cacao TCM_035565 I 0.894
Ca_04386 Cicer arietinum Ca_04386 I 0.894
29576.m000223 Ricinus communis 29576.m000223 I 0.894
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.894
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.894
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.894
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.893
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.892
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.892
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.891
Pm022570 Prunus mume Pm022570 I 0.891
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.890
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.889
Si016578m.g Setaria italica Si016578m.g I 0.889
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.889
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.888
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.887
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.887
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.887
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.887
Bra036731 Brassica rapa Bra036731 I 0.886
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.886
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.886
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.885
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.885
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.885
PK24122.1 Cannabis sativa PK24122.1 I 0.885
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.884
Bo6g083690 Brassica oleracea Bo6g083690 I 0.883
Bo6g120870 Brassica oleracea Bo6g120870 I 0.883
Bra003703 Brassica rapa Bra003703 I 0.883
Bra015716 Brassica rapa Bra015716 I 0.883
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.883
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.883
TCM_001348 Theobroma cacao TCM_001348 I 0.883
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.883
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.883
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.883
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.883
TCM_035571 Theobroma cacao TCM_035571 I 0.882
Bo8g027460 Brassica oleracea Bo8g027460 I 0.881
F775_24861 Aegilops tauschii F775_24861 N 0.880
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.879
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.879
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.879
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.879
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.879
Ca_25135 Cicer arietinum Ca_25135 I 0.878
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.874
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.874
Cla007910 Citrullus lanatus Cla007910 I 0.874
mgf018892m Mimulus guttatus mgf018892m N 0.874
Bo2g091240 Brassica oleracea Bo2g091240 I 0.873
Bra008285 Brassica rapa Bra008285 I 0.872
Ca_04385 Cicer arietinum Ca_04385 I 0.872
Cla001992 Citrullus lanatus Cla001992 I 0.871
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.871
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.868
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.868
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.868
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.867
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.867
PK26613.1 Cannabis sativa PK26613.1 I 0.862
Pm001889 Prunus mume Pm001889 I 0.860
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.857
Bra003702 Brassica rapa Bra003702 I 0.855
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.833
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.826
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.826
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.825
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.821
mgf015314m Mimulus guttatus mgf015314m N 0.818