TCM_015563 (Theobroma cacao)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 TCM_015563 T249939_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.906 0.818
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.906 0.818
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY23769 MADF 112 183
EOY23769 MADF 547 617
EOY23770 MADF 112 183
EOY23770 MADF 547 617

Links

Other MADF family TFs
Other Theobroma cacao TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30068.m002635 Ricinus communis 30068.m002635 I 0.968
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.968
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.968
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.968
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.968
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.967
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.967
Pm024289 Prunus mume Pm024289 I 0.967
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.964
MDP0000451038 Malus domestica MDP0000451038 I 0.964
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.963
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.963
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.963
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.962
Si012121m.g Setaria italica Si012121m.g I 0.961
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.961
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.959
OB04G27270 Oryza brachyantha OB04G27270 I 0.958
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.958
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.957
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.957
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.957
Cla005046 Citrullus lanatus Cla005046 I 0.957
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.957
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.957
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.956
OBART04G20290 Oryza barthii OBART04G20290 I 0.956
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.956
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.956
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.956
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.956
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.954
F775_26337 Aegilops tauschii F775_26337 I 0.953
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.953
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.953
MDP0000701272 Malus domestica MDP0000701272 I 0.953
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.952
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.951
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.951
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.951
Si034382m.g Setaria italica Si034382m.g I 0.950
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.948
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.948
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.947
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.947
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.946
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.944
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.944
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.944
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.944
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.944
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.944
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.943
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.943
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.940
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.939
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.939
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.937
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.937
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.937
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.936
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.935
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.935
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.935
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.934
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.932
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.930
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.930
OB02G33250 Oryza brachyantha OB02G33250 I 0.929
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.925
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.925
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.925
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.925
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.925
OBART02G25970 Oryza barthii OBART02G25970 I 0.919
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.919
mgf004276m Mimulus guttatus mgf004276m I 0.918
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.915
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.914
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.914
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.913
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.912
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.911
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.910
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.910
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.909
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.909
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.909
Bo6g049430 Brassica oleracea Bo6g049430 I 0.908
Bra040010 Brassica rapa Bra040010 I 0.908
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.906
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.906
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.906
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.906
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.904
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.904
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.903
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.902
Si016578m.g Setaria italica Si016578m.g I 0.901
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.901
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.901
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.901
MDP0000156139 Malus domestica MDP0000156139 I 0.900
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.899
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.899
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.898
TCM_035565 Theobroma cacao TCM_035565 I 0.897
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.897
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.896
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.896
Pm022572 Prunus mume Pm022572 I 0.896
MDP0000451107 Malus domestica MDP0000451107 I 0.896
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.894
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.894
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.894
TCM_001348 Theobroma cacao TCM_001348 I 0.892
PK24122.1 Cannabis sativa PK24122.1 I 0.892
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.891
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.891
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.890
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.889
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.889
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.889
Pm022570 Prunus mume Pm022570 I 0.888
29576.m000223 Ricinus communis 29576.m000223 I 0.888
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.888
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.888
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.888
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.886
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.885
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.885
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.885
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.883
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.883
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.883
Ca_04386 Cicer arietinum Ca_04386 I 0.882
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.881
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.881
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.880
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.879
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.879
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.879
Bo6g083690 Brassica oleracea Bo6g083690 I 0.878
Bra003703 Brassica rapa Bra003703 I 0.878
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.878
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.878
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.878
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.878
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.878
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.878
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.877
TCM_035571 Theobroma cacao TCM_035571 I 0.876
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.875
Ca_25135 Cicer arietinum Ca_25135 I 0.875
Cla001992 Citrullus lanatus Cla001992 I 0.873
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.873
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.872
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.871
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.871
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.871
mgf018892m Mimulus guttatus mgf018892m N 0.871
30206.m000769 Ricinus communis 30206.m000769 I 0.870
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.868
Bo6g120870 Brassica oleracea Bo6g120870 I 0.867
Bra015716 Brassica rapa Bra015716 I 0.867
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.867
Bra008285 Brassica rapa Bra008285 I 0.866
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.865
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.865
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.865
F775_24861 Aegilops tauschii F775_24861 N 0.863
Cla007910 Citrullus lanatus Cla007910 I 0.862
Bo8g027460 Brassica oleracea Bo8g027460 I 0.861
Bra036731 Brassica rapa Bra036731 I 0.861
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.861
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.861
Pm001889 Prunus mume Pm001889 I 0.860
mgf021983m Mimulus guttatus mgf021983m I 0.859
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.859
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.859
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.855
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.854
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.847
Bo2g091240 Brassica oleracea Bo2g091240 I 0.846
PK26613.1 Cannabis sativa PK26613.1 I 0.843
Ca_04385 Cicer arietinum Ca_04385 I 0.841
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.833
Bra003702 Brassica rapa Bra003702 I 0.827
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.816
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.816