Sb04g033390 (Sorghum bicolor)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Sb04g033390 T249771_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.895 0.704
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.895 0.704
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb04g033390.1 MADF 123 194
Sb04g033390.1 MADF 453 528

Links

Other MADF family TFs
Other Sorghum bicolor TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.962
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.956
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.954
Si016578m.g Setaria italica Si016578m.g I 0.954
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.933
OB02G33250 Oryza brachyantha OB02G33250 I 0.928
Si034382m.g Setaria italica Si034382m.g I 0.926
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.925
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.925
OBART02G25970 Oryza barthii OBART02G25970 I 0.925
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.925
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.925
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.925
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.923
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.923
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.921
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.918
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.917
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.916
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.916
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.916
Si012121m.g Setaria italica Si012121m.g I 0.916
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.915
MDP0000701272 Malus domestica MDP0000701272 I 0.915
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.915
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.915
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.915
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.915
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.915
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.914
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.913
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.911
Pm024289 Prunus mume Pm024289 I 0.911
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.911
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.911
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.910
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.910
OB04G27270 Oryza brachyantha OB04G27270 I 0.908
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.908
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.908
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.908
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.908
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.906
TCM_015563 Theobroma cacao TCM_015563 I 0.906
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.906
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.905
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.905
OBART04G20290 Oryza barthii OBART04G20290 I 0.905
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.905
30068.m002635 Ricinus communis 30068.m002635 I 0.905
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.905
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.905
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.905
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.905
MDP0000451038 Malus domestica MDP0000451038 I 0.904
mgf004276m Mimulus guttatus mgf004276m I 0.904
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.903
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.903
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.903
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.903
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.903
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.903
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.903
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.901
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.901
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.900
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.899
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.899
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.899
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.899
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.899
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.899
Bo6g049430 Brassica oleracea Bo6g049430 I 0.899
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.899
F775_26337 Aegilops tauschii F775_26337 I 0.899
Bra040010 Brassica rapa Bra040010 I 0.899
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.898
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.898
Cla005046 Citrullus lanatus Cla005046 I 0.896
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.896
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.895
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.895
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.895
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.895
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.895
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.895
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.895
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.894
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.893
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.892
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.892
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.889
Pm022570 Prunus mume Pm022570 I 0.888
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.886
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.886
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.886
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.885
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.883
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.880
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.880
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.879
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.879
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.878
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.874
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.872
30206.m000769 Ricinus communis 30206.m000769 I 0.871
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.871
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.871
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.869
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.869
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.869
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.869
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.867
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.866
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.866
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.865
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.863
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.862
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.860
MDP0000156139 Malus domestica MDP0000156139 I 0.860
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.859
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.859
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.857
Pm022572 Prunus mume Pm022572 I 0.857
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.856
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.856
TCM_035565 Theobroma cacao TCM_035565 I 0.856
TCM_001348 Theobroma cacao TCM_001348 I 0.856
29576.m000223 Ricinus communis 29576.m000223 I 0.856
MDP0000451107 Malus domestica MDP0000451107 I 0.855
PK26613.1 Cannabis sativa PK26613.1 I 0.855
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.855
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.854
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.854
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.854
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.853
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.851
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.851
mgf021983m Mimulus guttatus mgf021983m I 0.851
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.850
PK24122.1 Cannabis sativa PK24122.1 I 0.849
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.848
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.848
Bo8g027460 Brassica oleracea Bo8g027460 I 0.847
Bra036731 Brassica rapa Bra036731 I 0.847
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.846
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.846
Cla007910 Citrullus lanatus Cla007910 I 0.846
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.845
Ca_04385 Cicer arietinum Ca_04385 I 0.845
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.845
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.844
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.844
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.843
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.843
Bra008285 Brassica rapa Bra008285 I 0.843
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.843
Ca_25135 Cicer arietinum Ca_25135 I 0.842
F775_24861 Aegilops tauschii F775_24861 N 0.842
Bo2g091240 Brassica oleracea Bo2g091240 I 0.842
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.841
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.841
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.841
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.840
TCM_035571 Theobroma cacao TCM_035571 I 0.840
Bra003702 Brassica rapa Bra003702 I 0.838
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.838
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.838
Ca_04386 Cicer arietinum Ca_04386 I 0.837
mgf018892m Mimulus guttatus mgf018892m N 0.837
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.836
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.836
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.836
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.836
Bo6g083690 Brassica oleracea Bo6g083690 I 0.831
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.831
Bra015716 Brassica rapa Bra015716 I 0.831
Bo6g120870 Brassica oleracea Bo6g120870 I 0.831
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.831
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.831
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.831
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.831
Bra003703 Brassica rapa Bra003703 I 0.830
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.825
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.825
Cla001992 Citrullus lanatus Cla001992 I 0.825
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.819
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.818
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.815