GLYMA16G28250 (Glycine max)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 GLYMA16G28250 T249128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.852 0.681
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.852 0.681
AT1G76880
M06970_2.00 		Arabidopsis thaliana
RHRGTAAAAWNDDDWW
WWHHHNWTTTTACYDY		 Dap-seq
OMalley et al.(2016)
AT1G76880_col_a 		0.844 0.717
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA16G28250.2 MADF 78 148
GLYMA16G28250.2 MADF 486 558

Links

Other MADF family TFs
Other Glycine max TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.968
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.967
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.966
Bo6g083690 Brassica oleracea Bo6g083690 I 0.962
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.962
Ca_25135 Cicer arietinum Ca_25135 I 0.962
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.962
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.962
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.962
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.962
Bra003703 Brassica rapa Bra003703 I 0.961
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.961
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.960
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.960
Bo6g120870 Brassica oleracea Bo6g120870 I 0.958
Bra015716 Brassica rapa Bra015716 I 0.958
Bra008285 Brassica rapa Bra008285 I 0.957
Ca_04386 Cicer arietinum Ca_04386 I 0.955
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.955
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.954
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.953
TCM_035565 Theobroma cacao TCM_035565 I 0.952
MDP0000156139 Malus domestica MDP0000156139 I 0.952
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.951
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.950
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.950
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.949
Cla001992 Citrullus lanatus Cla001992 I 0.949
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.949
MDP0000451107 Malus domestica MDP0000451107 I 0.949
Ca_04385 Cicer arietinum Ca_04385 I 0.948
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.947
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.947
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.946
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.946
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.946
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.945
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.945
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.945
PK24122.1 Cannabis sativa PK24122.1 I 0.945
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.944
Pm022572 Prunus mume Pm022572 I 0.944
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.943
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.943
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.942
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.942
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.942
29576.m000223 Ricinus communis 29576.m000223 I 0.939
mgf021983m Mimulus guttatus mgf021983m I 0.939
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.939
30206.m000769 Ricinus communis 30206.m000769 I 0.938
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.938
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.938
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.938
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.937
TCM_001348 Theobroma cacao TCM_001348 I 0.937
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.935
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.935
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.935
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.935
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.933
TCM_035571 Theobroma cacao TCM_035571 I 0.931
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.931
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.930
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.930
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.929
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.929
Cla007910 Citrullus lanatus Cla007910 I 0.929
mgf018892m Mimulus guttatus mgf018892m N 0.928
Bo8g027460 Brassica oleracea Bo8g027460 I 0.926
Bra036731 Brassica rapa Bra036731 I 0.926
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.921
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.921
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.921
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.921
Pm022570 Prunus mume Pm022570 I 0.920
PK26613.1 Cannabis sativa PK26613.1 I 0.918
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.917
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.913
Bo2g091240 Brassica oleracea Bo2g091240 I 0.910
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.906
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.905
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.903
MDP0000701272 Malus domestica MDP0000701272 I 0.903
mgf004276m Mimulus guttatus mgf004276m I 0.902
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.902
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.902
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.901
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.900
F775_26337 Aegilops tauschii F775_26337 I 0.900
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.900
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.900
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.898
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.897
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.897
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.897
gene18585-v1.0-hybrid Fragaria vesca gene18585-v1.0-hybrid N 0.897
Lus10033504.g Linum usitatissimum Lus10033504.g N 0.897
Bra003702 Brassica rapa Bra003702 I 0.896
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.896
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.896
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.894
OB04G27270 Oryza brachyantha OB04G27270 I 0.893
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.893
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.893
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.893
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.892
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.892
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.892
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.892
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.892
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.892
TCM_015563 Theobroma cacao TCM_015563 I 0.891
Cla005046 Citrullus lanatus Cla005046 I 0.891
Lus10020873.g Linum usitatissimum Lus10020873.g N 0.891
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.890
mgf015314m Mimulus guttatus mgf015314m N 0.890
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.888
OBART04G20290 Oryza barthii OBART04G20290 I 0.888
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.888
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.888
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.888
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.888
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.888
MDP0000451038 Malus domestica MDP0000451038 I 0.888
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.887
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.887
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.887
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.887
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.887
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.887
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.885
Si012121m.g Setaria italica Si012121m.g I 0.883
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.883
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.883
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.882
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.881
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.881
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.881
30068.m002635 Ricinus communis 30068.m002635 I 0.881
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.881
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.880
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.877
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.877
Si034382m.g Setaria italica Si034382m.g I 0.877
Pm024289 Prunus mume Pm024289 I 0.877
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.877
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.874
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.873
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.873
OBART02G25970 Oryza barthii OBART02G25970 I 0.873
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.873
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.873
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.873
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.871
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.871
Solyc11g005380.1 Solanum lycopersicum Solyc11g005380.1 N 0.870
OB02G33250 Oryza brachyantha OB02G33250 I 0.868
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.868
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.867
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.867
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.865
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.863
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.863
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.863
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.863
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.863
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.863
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.863
F775_24861 Aegilops tauschii F775_24861 N 0.862
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.861
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.857
PGSC0003DMG400003964 Solanum tuberosum PGSC0003DMG400003964 N 0.857
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.857
Bo6g049430 Brassica oleracea Bo6g049430 I 0.856
Bra040010 Brassica rapa Bra040010 I 0.856
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.855
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.852
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.852
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.849
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.848
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.848
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.847
Si016578m.g Setaria italica Si016578m.g I 0.845
AT1G76880 Arabidopsis thaliana AT1G76880 D 0.844
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.844
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.834
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.832
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.829
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.829
AMTR_s00002p00271480 Amborella trichopoda AMTR_s00002p00271480 N 0.828
Pm001889 Prunus mume Pm001889 I 0.825
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.819