Thhalv10007000m.g (Eutrema salsugineum)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF10545 (MADF_DNA_bdg) IPR006578 Thhalv10007000m.g T250869_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.969 0.986
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.969 0.986
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10007000m MADF 78 149
Thhalv10007000m MADF 447 519
Thhalv10007163m MADF 78 149
Thhalv10007163m MADF 447 519

Links

Other MADF family TFs
Other Eutrema salsugineum TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.970
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.969
Bo6g049430 Brassica oleracea Bo6g049430 I 0.969
Bra040010 Brassica rapa Bra040010 I 0.969
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.969
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.967
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.939
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.937
Bo8g027460 Brassica oleracea Bo8g027460 I 0.934
Bra036731 Brassica rapa Bra036731 I 0.934
mgf004276m Mimulus guttatus mgf004276m I 0.934
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.926
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.923
OB04G27270 Oryza brachyantha OB04G27270 I 0.923
OBART04G20290 Oryza barthii OBART04G20290 I 0.923
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.923
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.923
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.923
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.923
Si012121m.g Setaria italica Si012121m.g I 0.923
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.922
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.922
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.922
Cla005046 Citrullus lanatus Cla005046 I 0.921
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.918
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.918
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.918
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.918
Pm024289 Prunus mume Pm024289 I 0.918
Si034382m.g Setaria italica Si034382m.g I 0.917
MDP0000451038 Malus domestica MDP0000451038 I 0.917
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.916
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.916
OB02G33250 Oryza brachyantha OB02G33250 I 0.916
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.916
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.916
F775_26337 Aegilops tauschii F775_26337 I 0.915
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.915
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.915
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.915
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.914
TCM_015563 Theobroma cacao TCM_015563 I 0.914
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.914
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.914
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.914
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.914
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.913
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.913
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.913
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.913
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.912
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.912
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.911
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.910
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.909
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.909
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.909
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.909
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.909
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.909
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.908
30068.m002635 Ricinus communis 30068.m002635 I 0.906
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.906
MDP0000701272 Malus domestica MDP0000701272 I 0.906
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.906
OBART02G25970 Oryza barthii OBART02G25970 I 0.905
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.905
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.905
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.905
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.905
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.905
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.905
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.905
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.905
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.904
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.904
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.903
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.903
Pm022570 Prunus mume Pm022570 I 0.903
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.902
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.901
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.900
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.899
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.898
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.895
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.895
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.893
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.893
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.892
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.892
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.892
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.890
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.890
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.888
Si016578m.g Setaria italica Si016578m.g I 0.888
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.888
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.887
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.887
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.887
30206.m000769 Ricinus communis 30206.m000769 I 0.886
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.885
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.885
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.884
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.883
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.883
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.880
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.880
MDP0000156139 Malus domestica MDP0000156139 I 0.879
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.877
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.876
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.874
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.873
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.871
MDP0000451107 Malus domestica MDP0000451107 I 0.871
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.870
TCM_035565 Theobroma cacao TCM_035565 I 0.870
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.870
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.868
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.866
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.865
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.865
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.864
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.864
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.864
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.863
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.861
Pm022572 Prunus mume Pm022572 I 0.861
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.859
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.859
Cla007910 Citrullus lanatus Cla007910 I 0.858
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.857
TCM_001348 Theobroma cacao TCM_001348 I 0.857
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.857
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.857
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.856
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.856
Bo2g091240 Brassica oleracea Bo2g091240 I 0.854
Ca_04386 Cicer arietinum Ca_04386 I 0.853
29576.m000223 Ricinus communis 29576.m000223 I 0.853
PK24122.1 Cannabis sativa PK24122.1 I 0.853
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.852
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.850
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.849
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.849
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.849
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.848
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.847
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.846
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.846
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.846
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.846
Bo6g083690 Brassica oleracea Bo6g083690 I 0.845
Bo6g120870 Brassica oleracea Bo6g120870 I 0.845
Bra015716 Brassica rapa Bra015716 I 0.845
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.845
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.845
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.845
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.845
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.845
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.845
Bra003703 Brassica rapa Bra003703 I 0.844
Ca_25135 Cicer arietinum Ca_25135 I 0.844
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.844
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.843
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.843
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.843
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.843
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.843
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.842
Cla001992 Citrullus lanatus Cla001992 I 0.841
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.841
PK26613.1 Cannabis sativa PK26613.1 I 0.841
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.840
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.840
Bra003702 Brassica rapa Bra003702 I 0.839
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.839
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.839
TCM_035571 Theobroma cacao TCM_035571 I 0.838
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.837
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.837
mgf021983m Mimulus guttatus mgf021983m I 0.836
Bra008285 Brassica rapa Bra008285 I 0.832
Ca_04385 Cicer arietinum Ca_04385 I 0.832
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.826
F775_24861 Aegilops tauschii F775_24861 N 0.823
Pm001889 Prunus mume Pm001889 I 0.820
mgf018892m Mimulus guttatus mgf018892m N 0.818
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.814