OB02G33250 (Oryza brachyantha)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 OB02G33250 T249525_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-GTL1
M06968_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_col_a 		0.908 0.746
AT-GTL1
M06969_2.00 		Arabidopsis thaliana
RHRGTAAAWW
WWTTTACYDY		 Dap-seq
OMalley et al.(2016)
GTL1_colamp_a 		0.908 0.746
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB02G33250.1 MADF 108 179
OB02G33250.1 MADF 407 478

Links

Other MADF family TFs
Other Oryza brachyantha TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA005934 Oryza indica BGIOSGA005934 I 0.970
OGLUM02G26410 Oryza glumaepatula OGLUM02G26410 I 0.970
ONIVA05G15440 Oryza nivara ONIVA05G15440 I 0.970
ORUFI02G27390 Oryza rufipogon ORUFI02G27390 I 0.970
OBART02G25970 Oryza barthii OBART02G25970 I 0.967
ORGLA02G0222200 Oryza glaberrima ORGLA02G0222200 I 0.967
OPUNC02G23730 Oryza punctata OPUNC02G23730 I 0.966
LPERR02G21190 Leersia perrieri LPERR02G21190 I 0.950
MLOC_74813 Hordeum vulgare MLOC_74813 I 0.944
OB04G27270 Oryza brachyantha OB04G27270 I 0.941
OPUNC04G17930 Oryza punctata OPUNC04G17930 I 0.941
BGIOSGA014631 Oryza indica BGIOSGA014631 I 0.939
OBART04G20290 Oryza barthii OBART04G20290 I 0.939
OGLUM04G20210 Oryza glumaepatula OGLUM04G20210 I 0.939
ONIVA04G18520 Oryza nivara ONIVA04G18520 I 0.939
ORUFI04G21880 Oryza rufipogon ORUFI04G21880 I 0.939
Si034382m.g Setaria italica Si034382m.g I 0.938
OLONG_017894 Oryza longistaminata OLONG_017894 I 0.936
Si012121m.g Setaria italica Si012121m.g I 0.936
Aquca_037_00343 Aquilegia coerulea Aquca_037_00343 I 0.936
Pavir.Gb01188 Panicum virgatum Pavir.Gb01188 I 0.936
BRADI5G17150 Brachypodium distachyon BRADI5G17150 I 0.935
GSMUA_Achr5G19950_001 Musa acuminata GSMUA_Achr5G19950_001 I 0.935
LPERR04G16420 Leersia perrieri LPERR04G16420 I 0.935
OGLUM03G01010 Oryza glumaepatula OGLUM03G01010 I 0.935
OMERI03G00890 Oryza meridionalis OMERI03G00890 I 0.935
ONIVA03G01170 Oryza nivara ONIVA03G01170 I 0.935
ORGLA03G0008300 Oryza glaberrima ORGLA03G0008300 I 0.935
ORUFI03G00820 Oryza rufipogon ORUFI03G00820 I 0.935
AMTR_s00041p00147950 Amborella trichopoda AMTR_s00041p00147950 I 0.934
Pavir.Ia04768 Panicum virgatum Pavir.Ia04768 I 0.934
Cla005046 Citrullus lanatus Cla005046 I 0.933
GRMZM2G414159 Zea mays GRMZM2G414159 I 0.932
POPTR_0001s45870 Populus trichocarpa POPTR_0001s45870 I 0.932
PRUPE_ppa001704mg Prunus persica PRUPE_ppa001704mg I 0.932
Pm024289 Prunus mume Pm024289 I 0.932
SapurV1A.0285s0240 Salix purpurea SapurV1A.0285s0240 I 0.932
LPERR03G01010 Leersia perrieri LPERR03G01010 I 0.931
OPUNC10G14260 Oryza punctata OPUNC10G14260 I 0.931
GRMZM2G016649 Zea mays GRMZM2G016649 I 0.930
Sb06g023980 Sorghum bicolor Sb06g023980 I 0.930
MDP0000701272 Malus domestica MDP0000701272 I 0.930
F775_26337 Aegilops tauschii F775_26337 I 0.929
TCM_015563 Theobroma cacao TCM_015563 I 0.929
Traes_2AL_9E68ABA72 Triticum aestivum Traes_2AL_9E68ABA72 I 0.929
Traes_2BL_0B80B3876 Triticum aestivum Traes_2BL_0B80B3876 I 0.929
AT-GTL1 Vitis vinifera VIT_02s0025g03220 I 0.929
POPTR_0011s15050 Populus trichocarpa POPTR_0011s15050 I 0.928
Sb04g033390 Sorghum bicolor Sb04g033390 I 0.928
Ciclev10018915m.g Citrus clementina Ciclev10018915m.g I 0.928
orange1.1g003766m.g Citrus sinensis orange1.1g003766m.g I 0.928
MLOC_22988 Hordeum vulgare MLOC_22988 I 0.927
MDP0000451038 Malus domestica MDP0000451038 I 0.927
Pavir.Ib00103 Panicum virgatum Pavir.Ib00103 I 0.927
evm.TU.supercontig_37.120 Carica papaya evm.TU.supercontig_37.120 I 0.926
Cucsa.193210 Cucumis sativus Cucsa.193210 I 0.924
BGIOSGA031553 Oryza indica BGIOSGA031553 I 0.923
MLOC_70549 Hordeum vulgare MLOC_70549 I 0.923
OGLUM10G15720 Oryza glumaepatula OGLUM10G15720 I 0.923
OMERI10G12340 Oryza meridionalis OMERI10G12340 I 0.923
ONIVA10G17310 Oryza nivara ONIVA10G17310 I 0.923
ORUFI10G16810 Oryza rufipogon ORUFI10G16810 I 0.923
SapurV1A.0047s0660 Salix purpurea SapurV1A.0047s0660 I 0.923
30068.m002635 Ricinus communis 30068.m002635 I 0.921
Gorai.003G072300 Gossypium raimondii Gorai.003G072300 I 0.921
cassava22361.valid.m1 Manihot esculenta cassava22361.valid.m1 I 0.920
cassava22362.valid.m1 Manihot esculenta cassava22362.valid.m1 I 0.920
cassava22363.valid.m1 Manihot esculenta cassava22363.valid.m1 I 0.920
Traes_1BL_A5A91DE10 Triticum aestivum Traes_1BL_A5A91DE10 I 0.919
TRIUR3_33328 Triticum urartu TRIUR3_33328 I 0.919
TRIUR3_33826 Triticum urartu TRIUR3_33826 I 0.919
Pavir.Ab02437 Panicum virgatum Pavir.Ab02437 I 0.919
GSMUA_Achr11G03520_001 Musa acuminata GSMUA_Achr11G03520_001 I 0.918
gene01828-v1.0-hybrid Fragaria vesca gene01828-v1.0-hybrid I 0.918
LPERR10G12070 Leersia perrieri LPERR10G12070 I 0.917
Sb01g017120 Sorghum bicolor Sb01g017120 I 0.916
Thhalv10007000m.g Eutrema salsugineum Thhalv10007000m.g I 0.916
AMTR_s00030p00088210 Amborella trichopoda AMTR_s00030p00088210 I 0.912
Bo6g049430 Brassica oleracea Bo6g049430 I 0.912
Bra040010 Brassica rapa Bra040010 I 0.912
Carubv10008638m.g Capsella rubella Carubv10008638m.g I 0.912
BRADI3G30457 Brachypodium distachyon BRADI3G30457 I 0.911
mgf004276m Mimulus guttatus mgf004276m I 0.910
AT-GTL1 Arabidopsis thaliana AT1G33240 D 0.908
AT-GTL1 Arabidopsis lyrata fgenesh2_kg.1__3451__AT1G33240.1 I 0.908
GRMZM2G169580 Zea mays GRMZM2G169580 I 0.907
Si016578m.g Setaria italica Si016578m.g I 0.907
Gorai.008G262400 Gossypium raimondii Gorai.008G262400 I 0.907
cassava2484.valid.m1 Manihot esculenta cassava2484.valid.m1 I 0.906
e_gw1.85.39.1 Physcomitrella patens e_gw1.85.39.1 I 0.906
gw1.19.47.1 Physcomitrella patens gw1.19.47.1 I 0.906
GRMZM2G063203 Zea mays GRMZM2G063203 I 0.905
Cagra.6133s0035 Capsella grandiflora Cagra.6133s0035 I 0.904
gene08173-v1.0-hybrid Fragaria vesca gene08173-v1.0-hybrid I 0.904
SELMODRAFT_48639 Selaginella moellendorffii SELMODRAFT_48639 I 0.903
SELMODRAFT_66294 Selaginella moellendorffii SELMODRAFT_66294 I 0.903
Ciclev10025533m.g Citrus clementina Ciclev10025533m.g I 0.903
orange1.1g012030m.g Citrus sinensis orange1.1g012030m.g I 0.903
BRADI1G77610 Brachypodium distachyon BRADI1G77610 I 0.899
SELMODRAFT_120369 Selaginella moellendorffii SELMODRAFT_120369 I 0.899
SELMODRAFT_85122 Selaginella moellendorffii SELMODRAFT_85122 I 0.899
VIT_18s0072g00670 Vitis vinifera VIT_18s0072g00670 I 0.899
POPTR_0019s02650 Populus trichocarpa POPTR_0019s02650 I 0.897
Ciclev10000627m.g Citrus clementina Ciclev10000627m.g I 0.897
orange1.1g007316m.g Citrus sinensis orange1.1g007316m.g I 0.897
evm.TU.supercontig_2611.1 Carica papaya evm.TU.supercontig_2611.1 I 0.896
Solyc12g056510.1 Solanum lycopersicum Solyc12g056510.1 I 0.894
Pm022570 Prunus mume Pm022570 I 0.894
GSMUA_Achr2G11910_001 Musa acuminata GSMUA_Achr2G11910_001 I 0.891
GSMUA_Achr9G18800_001 Musa acuminata GSMUA_Achr9G18800_001 I 0.888
30206.m000769 Ricinus communis 30206.m000769 I 0.887
POPTR_0001s31660 Populus trichocarpa POPTR_0001s31660 I 0.886
Cagra.20992s0001 Capsella grandiflora Cagra.20992s0001 I 0.886
Carubv10019974m.g Capsella rubella Carubv10019974m.g I 0.886
SapurV1A.0231s0350 Salix purpurea SapurV1A.0231s0350 I 0.886
cassava21480.m1 Manihot esculenta cassava21480.m1 I 0.883
GSMUA_Achr1G04100_001 Musa acuminata GSMUA_Achr1G04100_001 I 0.879
gene08175-v1.0-hybrid Fragaria vesca gene08175-v1.0-hybrid I 0.879
PRUPE_ppa021097mg Prunus persica PRUPE_ppa021097mg I 0.878
Ciclev10000593m.g Citrus clementina Ciclev10000593m.g I 0.878
MDP0000156139 Malus domestica MDP0000156139 I 0.878
orange1.1g006925m.g Citrus sinensis orange1.1g006925m.g I 0.878
SapurV1A.0655s0060 Salix purpurea SapurV1A.0655s0060 I 0.878
GSMUA_Achr4G24780_001 Musa acuminata GSMUA_Achr4G24780_001 I 0.877
Cla007910 Citrullus lanatus Cla007910 I 0.876
cassava16854.m1 Manihot esculenta cassava16854.m1 I 0.876
Gorai.002G231500 Gossypium raimondii Gorai.002G231500 I 0.876
Bo2g091240 Brassica oleracea Bo2g091240 I 0.875
PRUPE_ppa002848mg Prunus persica PRUPE_ppa002848mg I 0.875
TCM_001348 Theobroma cacao TCM_001348 I 0.875
Pm022572 Prunus mume Pm022572 I 0.875
TCM_035565 Theobroma cacao TCM_035565 I 0.874
29576.m000223 Ricinus communis 29576.m000223 I 0.874
Lus10018888.g Linum usitatissimum Lus10018888.g I 0.874
MDP0000451107 Malus domestica MDP0000451107 I 0.874
POPTR_0002s06900 Populus trichocarpa POPTR_0002s06900 I 0.873
Bostr.3359s0047 Boechera stricta Bostr.3359s0047 I 0.872
POPTR_0005s21420 Populus trichocarpa POPTR_0005s21420 I 0.871
evm.TU.supercontig_21.194 Carica papaya evm.TU.supercontig_21.194 I 0.870
GLYMA10G36950 Glycine max GLYMA10G36950 I 0.869
Cucsa.250070 Cucumis sativus Cucsa.250070 I 0.869
mgf021983m Mimulus guttatus mgf021983m I 0.869
Gorai.008G099700 Gossypium raimondii Gorai.008G099700 I 0.869
GLYMA16G28250 Glycine max GLYMA16G28250 I 0.868
Ca_25135 Cicer arietinum Ca_25135 I 0.868
cassava16715.m1 Manihot esculenta cassava16715.m1 I 0.867
Gorai.009G253900 Gossypium raimondii Gorai.009G253900 I 0.866
Bo8g027460 Brassica oleracea Bo8g027460 I 0.865
Bra036731 Brassica rapa Bra036731 I 0.865
SapurV1A.0066s0010 Salix purpurea SapurV1A.0066s0010 I 0.865
POPTR_0005s21410 Populus trichocarpa POPTR_0005s21410 I 0.863
PK26613.1 Cannabis sativa PK26613.1 I 0.862
Bra003702 Brassica rapa Bra003702 I 0.861
GLYMA02G09060 Glycine max GLYMA02G09060 I 0.861
SapurV1A.0625s0070 Salix purpurea SapurV1A.0625s0070 I 0.861
SapurV1A.5612s0010 Salix purpurea SapurV1A.5612s0010 I 0.861
TCM_035571 Theobroma cacao TCM_035571 I 0.860
VIT_04s0044g00510 Vitis vinifera VIT_04s0044g00510 I 0.860
GLYMA10G36960 Glycine max GLYMA10G36960 I 0.859
GLYMA20G30640 Glycine max GLYMA20G30640 I 0.859
POPTR_0002s06920 Populus trichocarpa POPTR_0002s06920 I 0.859
MTR_6g035370 Medicago truncatula MTR_6g035370 I 0.858
Ca_04386 Cicer arietinum Ca_04386 I 0.857
mgf018892m Mimulus guttatus mgf018892m N 0.857
F775_24861 Aegilops tauschii F775_24861 N 0.856
SapurV1A.0625s0080 Salix purpurea SapurV1A.0625s0080 I 0.854
Bo6g083690 Brassica oleracea Bo6g083690 I 0.852
Bo6g120870 Brassica oleracea Bo6g120870 I 0.852
Bra015716 Brassica rapa Bra015716 I 0.852
scaffold_202643.1 Arabidopsis lyrata scaffold_202643.1 I 0.852
Bostr.20129s0126 Boechera stricta Bostr.20129s0126 I 0.852
Cagra.20992s0002 Capsella grandiflora Cagra.20992s0002 I 0.852
Carubv10020016m.g Capsella rubella Carubv10020016m.g I 0.852
Thhalv10018297m.g Eutrema salsugineum Thhalv10018297m.g I 0.852
Bra003703 Brassica rapa Bra003703 I 0.851
PGSC0003DMG400024107 Solanum tuberosum PGSC0003DMG400024107 I 0.851
Solyc04g071360.2 Solanum lycopersicum Solyc04g071360.2 I 0.851
MTR_1g098900 Medicago truncatula MTR_1g098900 I 0.850
Cla001992 Citrullus lanatus Cla001992 I 0.850
Cucsa.204000 Cucumis sativus Cucsa.204000 I 0.850
MTR_1g098870 Medicago truncatula MTR_1g098870 I 0.845
PK24122.1 Cannabis sativa PK24122.1 I 0.845
Ca_04385 Cicer arietinum Ca_04385 I 0.839
Bra008285 Brassica rapa Bra008285 I 0.838
Pm001889 Prunus mume Pm001889 I 0.836
SapurV1A.0066s0020 Salix purpurea SapurV1A.0066s0020 I 0.832
Gorai.009G253700 Gossypium raimondii Gorai.009G253700 I 0.831
mgf015314m Mimulus guttatus mgf015314m N 0.829
GLYMA06G15500 Glycine max GLYMA06G15500 N 0.826
GLYMA04G39400 Glycine max GLYMA04G39400 N 0.823
GLYMA09G19750 Glycine max GLYMA09G19750 N 0.823