CLUG_04340 (Candida lusitaniae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 CLUG_04340 T252698_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.771 0.771
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.771 0.771
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CLUT_04340 MADS box 10 57

Links

Other MADS box family TFs
Other Candida lusitaniae TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA07G0073600 Oryza glaberrima ORGLA07G0073600 N
ONIVA07G05980 Oryza nivara ONIVA07G05980 N
ONIVA07G05990 Oryza nivara ONIVA07G05990 N
ONIVA07G07540 Oryza nivara ONIVA07G07540 N
OPUNC01G36560 Oryza punctata OPUNC01G36560 N
OPUNC07G07180 Oryza punctata OPUNC07G07180 N
OPUNC07G08180 Oryza punctata OPUNC07G08180 N
ORGLA01G0315200 Oryza glaberrima ORGLA01G0315200 N
ORGLA07G0062800 Oryza glaberrima ORGLA07G0062800 N
ONIVA01G42540 Oryza nivara ONIVA01G42540 N
ORUFI01G41050 Oryza rufipogon ORUFI01G41050 N
ORUFI07G07450 Oryza rufipogon ORUFI07G07450 N
ORUFI07G07460 Oryza rufipogon ORUFI07G07460 N
ORUFI07G08780 Oryza rufipogon ORUFI07G08780 N
OS01G0855400 Oryza sativa OS01G0855400 N
Sb01g013830 Sorghum bicolor Sb01g013830 N
Pavir.J13941 Panicum virgatum Pavir.J13941 N
BGIOSGA004824 Oryza indica BGIOSGA004824 N
OMERI07G07070 Oryza meridionalis OMERI07G07070 N
OLONG_021151 Oryza longistaminata OLONG_021151 N
OLONG_012136 Oryza longistaminata OLONG_012136 N
OGLUM07G07870 Oryza glumaepatula OGLUM07G07870 N
OGLUM07G07150 Oryza glumaepatula OGLUM07G07150 N
OBART07G08680 Oryza barthii OBART07G08680 N
OBART07G07450 Oryza barthii OBART07G07450 N
OBART07G07440 Oryza barthii OBART07G07440 N
OBART01G37720 Oryza barthii OBART01G37720 N
OB07G17380 Oryza brachyantha OB07G17380 N
OB01G46450 Oryza brachyantha OB01G46450 N
LPERR01G32380 Leersia perrieri LPERR01G32380 N
GRMZM2G121570 Zea mays GRMZM2G121570 N
BGIOSGA025449 Oryza indica BGIOSGA025449 N
BGIOSGA024590 Oryza indica BGIOSGA024590 N