KUCA_T00000739001 (Kuraishia capsulata)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 KUCA_T00000739001 T254503_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.708 0.708
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CDK24773 MADS box 10 57

Links

Other MADS box family TFs
Other Kuraishia capsulata TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D 0.000
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I 0.000
Thhalv10015971m.g Eutrema salsugineum Thhalv10015971m.g I 0.000
Thhalv10005497m.g Eutrema salsugineum Thhalv10005497m.g I 0.000
SapurV1A.0400s0200 Salix purpurea SapurV1A.0400s0200 I 0.000
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I 0.000
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.000
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I 0.000
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.000
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.000
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.000
cassava11118.m1 Manihot esculenta cassava11118.m1 I 0.000
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.000
POPTR_0012s13910 Populus trichocarpa POPTR_0012s13910 I 0.000
Bra032938 Brassica rapa Bra032938 I 0.000
Bra025217 Brassica rapa Bra025217 I 0.000
Bo7g083780 Brassica oleracea Bo7g083780 I 0.000
Bo3g065910 Brassica oleracea Bo3g065910 I 0.000
Bo00285s360 Brassica oleracea Bo00285s360 I 0.000