PTRG_08080 (Pyrenophora triticirepentis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 PTRG_08080 T255970_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.750 0.750
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.750 0.750
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.750 0.750
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDU50999 MADS box 10 57

Links

Other MADS box family TFs
Other Pyrenophora triticirepentis TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LBD23 Arabidopsis thaliana AT3G26620 D 0.000
cassava35977.valid.m1 Manihot esculenta cassava35977.valid.m1 I 0.000
SapurV1A.0400s0200 Salix purpurea SapurV1A.0400s0200 I 0.000
evm.TU.supercontig_1.339 Carica papaya evm.TU.supercontig_1.339 I 0.000
evm.TU.supercontig_1.335 Carica papaya evm.TU.supercontig_1.335 I 0.000
Eucgr.A02814 Eucalyptus grandis Eucgr.A02814 I 0.000
Carubv10018979m.g Capsella rubella Carubv10018979m.g I 0.000
Cagra.3598s0013 Capsella grandiflora Cagra.3598s0013 I 0.000
Bostr.0556s0333 Boechera stricta Bostr.0556s0333 I 0.000
cassava11118.m1 Manihot esculenta cassava11118.m1 I 0.000
LBD24 Arabidopsis thaliana AT3G26660 I 0.000
scaffold_500562.1 Arabidopsis lyrata scaffold_500562.1 I 0.000
Bo00285s360 Brassica oleracea Bo00285s360 I 0.000
POPTR_0015s13870 Populus trichocarpa POPTR_0015s13870 N 0.000
SapurV1A.0068s0590 Salix purpurea SapurV1A.0068s0590 N 0.000
MDP0000288452 Malus domestica MDP0000288452 N 0.000
Gorai.009G123600 Gossypium raimondii Gorai.009G123600 N 0.000
Gorai.008G280400 Gossypium raimondii Gorai.008G280400 N 0.000
gene26806-v1.0-hybrid Fragaria vesca gene26806-v1.0-hybrid N 0.000
GLYMA14G02440 Glycine max GLYMA14G02440 N 0.000
MTR_5g093010 Medicago truncatula MTR_5g093010 N 0.000
MTR_7g028905 Medicago truncatula MTR_7g028905 N 0.000
VIT_16s0100g00440 Vitis vinifera VIT_16s0100g00440 N 0.000
PRUPE_ppa024504mg Prunus persica PRUPE_ppa024504mg N 0.000
mgf017470m Mimulus guttatus mgf017470m N 0.000
Cucsa.250990 Cucumis sativus Cucsa.250990 N 0.000
Cucsa.161230 Cucumis sativus Cucsa.161230 N 0.000
TCM_035123 Theobroma cacao TCM_035123 N 0.000
29613.m000372 Ricinus communis 29613.m000372 N 0.000
Pm016263 Prunus mume Pm016263 N 0.000
Ca_16884 Cicer arietinum Ca_16884 N 0.000