Traes_5DS_3EBE121C7 (Triticum aestivum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 Traes_5DS_3EBE121C7 T256580_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL16
M06987_2.00 		Arabidopsis thaliana
TWCCHAAWDDGGWAA
TTWCCHHWTTDGGWA		 Dap-seq
OMalley et al.(2016)
AGL16_col_a 		0.771 0.771
AGL16
M06988_2.00 		Arabidopsis thaliana
WDWNTTWCCHWAWWDGGAAAS
STTTCCHWWTWDGGWAANWHW		 Dap-seq
OMalley et al.(2016)
AGL16_colamp_a 		0.771 0.771
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
AG
M02695_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHADN
NHTDCCHNWTWWGGWAAD		 SELEX
Mathelier et al.(2014)
MA0005.2 		0.729 0.729
AG
M10923_2.00 		Arabidopsis thaliana
HTTWCCWWAWNDGGHWDN
NHTDCCHNWTWWGGWAAD		 Transfac
Matys et al.(2006)
P$AG_01 		0.729 0.729
AG
M10924_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_02 		0.729 0.729
AG
M10925_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_03 		0.729 0.729
AG_TOBAC
M10995_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG1_02 		0.729 0.729
AG
M10926_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AG_Q2 		0.729 0.729
A1YJE4_HORVD
M10900_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BM10_01 		0.729 0.729
Q08711_PETHY
M10999_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP6_01 		0.729 0.729
O82698_MALDO
M11021_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS10_01 		0.729 0.729
Q9FVN1_MAIZE
M10982_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS2_03 		0.729 0.729
MADS3_ORYSJ
M10963_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_01 		0.729 0.729
AG_PETHY
M10994_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS3_02 		0.729 0.729
MAD55_ORYSJ
M10962_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS55_01 		0.729 0.729
Q4U0F1_WHEAT
M10978_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAVRT2_01 		0.729 0.729
AGL42
M06995_2.00 		Arabidopsis thaliana
RATGATG
CATCATY		 Dap-seq
OMalley et al.(2016)
AGL42_col_a 		0.708 0.708
AGL6
M06986_2.00 		Arabidopsis thaliana
TTWCCHAAAAWRGWAANWW
WWNTTWCYWTTTTDGGWAA		 Dap-seq
OMalley et al.(2016)
AGL6_col_a 		0.708 0.708
Q9ATE7_PETHY
M11010_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$FBP22_01 		0.708 0.708
Q8VWZ3_MALDO
M11025_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS14_02 		0.708 0.708
Q8VWZ2_MALDO
M11024_2.00 		Malus domestica Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS15_02 		0.708 0.708
MADS16
M10971_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS16_01 		0.708 0.708
MAD17_ORYSJ
M10961_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS17_01 		0.708 0.708
MADS18
M10973_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS18_01 		0.708 0.708
MADS50
M10968_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS50_01 		0.708 0.708
MADS6
M10967_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MADS6_01 		0.708 0.708
Solyc05g012020.2
M10986_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_01 		0.708 0.708
Solyc05g012020.2
M10987_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2_01 		0.708 0.708
Solyc05g012020.2
M10988_2.00 		Solanum lycopersicum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$RIN_Q2 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Traes_5DS_3EBE121C7.1 MADS box 10 57

Links

Other MADS box family TFs
Other Triticum aestivum TFs

891 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PK05128.1 Cannabis sativa PK05128.1 D 0.000
OS02G0266800 Oryza sativa OS02G0266800 D 0.000
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I 0.000
mgf012838m Mimulus guttatus mgf012838m I 0.000
mgf009803m Mimulus guttatus mgf009803m I 0.000
gw1.220.22.1 Physcomitrella patens gw1.220.22.1 I 0.000
gw1.213.115.1 Physcomitrella patens gw1.213.115.1 I 0.000
gw1.189.102.1 Physcomitrella patens gw1.189.102.1 I 0.000
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I 0.000
Cucsa.388800 Cucumis sativus Cucsa.388800 I 0.000
Cucsa.289120 Cucumis sativus Cucsa.289120 I 0.000
Cucsa.133290 Cucumis sativus Cucsa.133290 I 0.000
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I 0.000
29598.m000468 Ricinus communis 29598.m000468 I 0.000
Pm020231 Prunus mume Pm020231 I 0.000
Pm003522 Prunus mume Pm003522 I 0.000
Cla020112 Citrullus lanatus Cla020112 I 0.000
Cla015037 Citrullus lanatus Cla015037 I 0.000
Cla011478 Citrullus lanatus Cla011478 I 0.000
Ca_03753 Cicer arietinum Ca_03753 I 0.000
BZO2H3 Vitis vinifera VIT_14s0030g02200 I 0.000
MDP0000270365 Malus domestica MDP0000270365 I 0.000
PDK_20s1417191g003 Phoenix dactylifera PDK_20s1417191g003 I 0.000
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I 0.000
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I 0.000
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I 0.000
Pavir.Ca02738 Panicum virgatum Pavir.Ca02738 I 0.000
Pavir.Ab00505 Panicum virgatum Pavir.Ab00505 I 0.000
Pavir.Aa03364 Panicum virgatum Pavir.Aa03364 I 0.000
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I 0.000
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I 0.000
TCM_026349 Theobroma cacao TCM_026349 I 0.000
Lus10015913.g Linum usitatissimum Lus10015913.g I 0.000
Lus10006590.g Linum usitatissimum Lus10006590.g I 0.000
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I 0.000
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I 0.000
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I 0.000
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I 0.000
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I 0.000
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I 0.000
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I 0.000
OMERI02G06470 Oryza meridionalis OMERI02G06470 I 0.000
OGLUM02G11500 Oryza glumaepatula OGLUM02G11500 I 0.000
OGLUM02G05620 Oryza glumaepatula OGLUM02G05620 I 0.000
OBART02G11580 Oryza barthii OBART02G11580 I 0.000
OBART02G05680 Oryza barthii OBART02G05680 I 0.000
MTR_7g115120 Medicago truncatula MTR_7g115120 I 0.000
LPERR12G15130 Leersia perrieri LPERR12G15130 I 0.000
LPERR02G04950 Leersia perrieri LPERR02G04950 I 0.000
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I 0.000
OMERI02G12230 Oryza meridionalis OMERI02G12230 I 0.000
GSMUA_Achr10G08670_001 Musa acuminata GSMUA_Achr10G08670_001 I 0.000
GRMZM2G098904 Zea mays GRMZM2G098904 I 0.000
GLYMA19G43420 Glycine max GLYMA19G43420 I 0.000
GLYMA03G40730 Glycine max GLYMA03G40730 I 0.000
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I 0.000
Bra020620 Brassica rapa Bra020620 I 0.000
Bra010010 Brassica rapa Bra010010 I 0.000
BGIOSGA007649 Oryza indica BGIOSGA007649 I 0.000
BGIOSGA006734 Oryza indica BGIOSGA006734 I 0.000
OS02G0175100 Oryza sativa OS02G0175100 I 0.000
AMTR_s00002p00268140 Amborella trichopoda AMTR_s00002p00268140 I 0.000
Solyc08g022080.2 Solanum lycopersicum Solyc08g022080.2 I 0.000
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I 0.000
Si017778m.g Setaria italica Si017778m.g I 0.000
Sb08g020600 Sorghum bicolor Sb08g020600 I 0.000
Sb04g005020 Sorghum bicolor Sb04g005020 I 0.000
PRUPE_ppa005367mg Prunus persica PRUPE_ppa005367mg I 0.000
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I 0.000
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I 0.000
VIT_07s0141g00170 Vitis vinifera VIT_07s0141g00170 I 0.000
ORUFI02G11610 Oryza rufipogon ORUFI02G11610 I 0.000
ORUFI02G05790 Oryza rufipogon ORUFI02G05790 I 0.000
ORGLA02G0104200 Oryza glaberrima ORGLA02G0104200 I 0.000
ORGLA02G0052000 Oryza glaberrima ORGLA02G0052000 I 0.000
OPUNC12G16360 Oryza punctata OPUNC12G16360 I 0.000
OPUNC02G10230 Oryza punctata OPUNC02G10230 I 0.000
ONIVA02G12920 Oryza nivara ONIVA02G12920 I 0.000
ONIVA02G06040 Oryza nivara ONIVA02G06040 I 0.000