VIT_03s0017g00450 (Vitis vinifera)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 VIT_03s0017g00450 T256776_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SVP
M06984_2.00 		Arabidopsis thaliana
DDCCVAAWANGGHAA
TTDCCNTWTTBGGHH		 Dap-seq
OMalley et al.(2016)
SVP_colamp_v3b 		0.750 0.750
SVP
M06985_2.00 		Arabidopsis thaliana
CCMAAWANGGWAANW
WNTTWCCNTWTTKGG		 Dap-seq
OMalley et al.(2016)
SVP_col_v3b 		0.750 0.750
SVP
M08424_2.00 		Arabidopsis thaliana
NWWHCCMAAAADGGAAARHH
DDYTTTCCHTTTTKGGDWWN		 ChIP-chip
Mathelier et al.(2014)
MA0555.1 		0.750 0.750
AGL15
M06992_2.00 		Arabidopsis thaliana
WNTTWCCHAAWDWRGAAAN
NTTTCYWHWTTDGGWAANW		 Dap-seq
OMalley et al.(2016)
AGL15_col_a 		0.708 0.708
AGL15
M06993_2.00 		Arabidopsis thaliana
DNTTWCCHAAWDDRGAAANHH
DDNTTTCYHHWTTDGGWAANH		 Dap-seq
OMalley et al.(2016)
AGL15_colamp_a 		0.708 0.708
squamosa
M02697_2.00 		Antirrhinum majus
MYAWAWAWRGHAAN
NTTDCYWTWTWTRK		 SELEX
Mathelier et al.(2014)
MA0082.1 		0.708 0.708
AGL15
M10927_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_01 		0.708 0.708
AGL15
M10928_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGL15_02 		0.708 0.708
Q38742_ANTMA
M11000_2.00 		Antirrhinum majus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$SQUA_01 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_03s0017g00450.t01 MADS box 10 57

Links

Other MADS box family TFs
Other Vitis vinifera TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SUF4 Arabidopsis thaliana AT1G30970 N 0.000
Bo2g121020 Brassica oleracea Bo2g121020 N 0.000
Bo5g065610 Brassica oleracea Bo5g065610 N 0.000
Bra023153 Brassica rapa Bra023153 N 0.000
Bra039880 Brassica rapa Bra039880 N 0.000
SUF4 Arabidopsis lyrata fgenesh2_kg.1__3297__AT1G30970.1 N 0.000
GRMZM2G081812 Zea mays GRMZM2G081812 N 0.000
Sb02g032810 Sorghum bicolor Sb02g032810 N 0.000
Si030356m.g Setaria italica Si030356m.g N 0.000
Solyc02g032120.2 Solanum lycopersicum Solyc02g032120.2 N 0.000
Bostr.15697s0404 Boechera stricta Bostr.15697s0404 N 0.000
Cagra.1508s0093 Capsella grandiflora Cagra.1508s0093 N 0.000
Pavir.Ba01662 Panicum virgatum Pavir.Ba01662 N 0.000
Pavir.J03264 Panicum virgatum Pavir.J03264 N 0.000
Thhalv10008022m.g Eutrema salsugineum Thhalv10008022m.g N 0.000
PK05604.1 Cannabis sativa PK05604.1 N 0.000