RLM1 (Saccharomyces cerevisiae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00319 (SRF-TF) IPR002100 YPL089C T256842_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RLM1
M08459_2.00		 Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1		 (Direct) (Direct)
RLM1
M08590_2.00		 Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.917 0.917
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.917 0.917
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
YPL089C MADS box 10 57

Links

Other MADS box family TFs
Other Saccharomyces cerevisiae TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MEF2A Homo sapiens ENSG00000068305 D 0.759
MEF2C Homo sapiens ENSG00000081189 D 0.737
Mef2c Mus musculus ENSMUSG00000005583 D 0.700
SMP1 Saccharomyces cerevisiae YBR182C D 0.917
CIMG_07638 Coccidioides immitis CIMG_07638 I 0.729
CLUG_04340 Candida lusitaniae CLUG_04340 I 0.750
CPAG_01728 Candida parapsilosis CPAG_01728 I 0.750
MCYG_04979 Microsporum canis MCYG_04979 I 0.729
PGUG_02571 Candida guilliermondii PGUG_02571 I 0.750
SNOG_15194 Stagonospora nodorum SNOG_15194 I 0.750
A1O1_05243 Capronia coronata A1O1_05243 I 0.729
A1O3_09529 Capronia epimyces A1O3_09529 I 0.729
A1O5_02336 Cladophialophora psammophila A1O5_02336 I 0.729
A1O7_07076 Cladophialophora yegresii A1O7_07076 I 0.729
A1O9_04901 Exophiala aquamarina A1O9_04901 I 0.729
AGOS_AGR198C Ashbya gossypii AGOS_AGR198C I 0.833
ARB_05322 Arthroderma benhamiae ARB_05322 I 0.729
AUEXF2481DRAFT_43803 Aureobasidium subglaciale AUEXF2481DRAFT_43803 I 0.729
BAUCODRAFT_25460 Baudoinia compniacensis BAUCODRAFT_25460 I 0.705
BBA_05338 Beauveria bassiana BBA_05338 I 0.708
Bcin05g04030 Botrytis cinerea Bcin05g04030 I 0.750
BDDG_00259 Blastomyces dermatitidis BDDG_00259 I 0.750
BGHDH14_bghG002741000001001 Blumeria graminis BGHDH14_bghG002741000001001 I 0.729
BOTBODRAFT_121202 Botryobasidium botryosum BOTBODRAFT_121202 I 0.708
ACLA_036490 Aspergillus clavatus CADACLAG00003970 I 0.729
CADAFLAG00001438 Aspergillus flavus CADAFLAG00001438 I 0.729
AFUA_3G08520 Aspergillus fumigatus CADAFUAG00005633 I 0.729
CADANGAG00002744 Aspergillus niger CADANGAG00002744 I 0.729
ANIA_02984 Aspergillus nidulans CADANIAG00010096 I 0.729
CADAORAG00003304 Aspergillus oryzae CADAORAG00003304 I 0.729
ATEG_01619 Aspergillus terreus CADATEAG00002690 I 0.729
NFIA_068610 Neosartorya fischeri CADNFIAG00006321 I 0.729
CAGL0H05621g Candida glabrata CAGL0H05621g I 0.833
CANTEDRAFT_125008 Candida tenuis CANTEDRAFT_125008 I 0.750
CaO19.12132 Candida albicans CaO19.12132 I 0.729
CaO19.4662 Candida albicans CaO19.4662 I 0.729
CD36_41250 Candida dubliniensis CD36_41250 I 0.750
CFIO01_13635 Colletotrichum fioriniae CFIO01_13635 I 0.729
CH063_12469 Colletotrichum higginsianum CH063_12469 I 0.729
CLUG_04340 Clavispora lusitaniae CLUG_04340 I 0.750
CMQ_3522 Grosmannia clavigera CMQ_3522 I 0.729
Cob_13332 Colletotrichum orbiculare Cob_13332 I 0.729
COCC4DRAFT_131332 Bipolaris maydis COCC4DRAFT_131332 I 0.750
COCCADRAFT_38888 Bipolaris zeicola COCCADRAFT_38888 I 0.750
COCMIDRAFT_27992 Bipolaris oryzae COCMIDRAFT_27992 I 0.750
COCSADRAFT_191180 Bipolaris sorokiniana COCSADRAFT_191180 I 0.750
COCVIDRAFT_17132 Bipolaris victoriae COCVIDRAFT_17132 I 0.750
CORT_0E04370 Candida orthopsilosis CORT_0E04370 I 0.771
CPC735_043100 Coccidioides posadasii CPC735_043100 I 0.729
CPUR_08194 Claviceps purpurea CPUR_08194 I 0.708
CSUB01_02910 Colletotrichum sublineola CSUB01_02910 I 0.729
CTHT_0055000 Chaetomium thermophilum CTHT_0055000 I 0.708
CTRG_00027 Candida tropicalis CTRG_00027 I 0.771
DEHA2B02882g Debaryomyces hansenii DEHA2B02882g I 0.771
DOTSEDRAFT_71657 Dothistroma septosporum DOTSEDRAFT_71657 I 0.729
Ecym_7060 Eremothecium cymbalariae Ecym_7060 I 0.833
EPUS_00923 Endocarpon pusillum EPUS_00923 I 0.750
EURHEDRAFT_408541 Aspergillus ruber EURHEDRAFT_408541 I 0.729
EV44_g2988 Erysiphe necator EV44_g2988 I 0.750
F503_03505 Ophiostoma piceae uamh F503_03505 I 0.750
FFUJ_04051 Fusarium fujikuroi FFUJ_04051 I 0.708
FGRRES_09339 Fusarium graminearum FGRRES_09339 I 0.708
FOXG_05887 Fusarium oxysporum FOXG_05887 I 0.708
FPSE_05044 Fusarium pseudograminearum FPSE_05044 I 0.708
FVEG_03759 Fusarium verticillioides FVEG_03759 I 0.708
G210_1171 Candida maltosa G210_1171 I 0.771
G647_03030 Cladophialophora carrionii G647_03030 I 0.729
GGTG_04012 Gaeumannomyces graminis GGTG_04012 I 0.708
GLRG_00647 Colletotrichum graminicola GLRG_00647 I 0.729
GMDG_00759 Pseudogymnoascus destructans GMDG_00759 I 0.729
GNLVRS01_PISO0M22936g Millerozyma farinosa GNLVRS01_PISO0M22936g I 0.854
GNLVRS01_PISO0N23201g Millerozyma farinosa GNLVRS01_PISO0N23201g I 0.833
GSTUM_00008714001 Tuber melanosporum GSTUM_00008714001 I 0.750
H101_08129 Trichophyton interdigitale H101_08129 I 0.729
H102_05233 Trichophyton rubrum H102_05233 I 0.729
H105_05252 Trichophyton soudanense H105_05252 I 0.729
HCBG_00204 Histoplasma capsulatum HCBG_00204 I 0.750
HMPREF1120_02025 Exophiala dermatitidis HMPREF1120_02025 I 0.729
HMPREF1541_07944 Cyphellophora europaea HMPREF1541_07944 I 0.750
HMPREF1624_03092 Sporothrix schenckii HMPREF1624_03092 I 0.750
HPODL_00493 Ogataea parapolymorpha HPODL_00493 I 0.729
JL09_g2233 Pichia kudriavzevii JL09_g2233 I 0.729
KAFR_0E00800 Kazachstania africana KAFR_0E00800 I 0.875
KAFR_0I00730 Kazachstania africana KAFR_0I00730 I 0.854
KLLA0_E24025g Kluyveromyces lactis KLLA0_E24025g I 0.833
KLTH0E13156g Lachancea thermotolerans KLTH0E13156g I 0.833
KNAG_0A01830 Kazachstania naganishii KNAG_0A01830 I 0.812
Kpol_1048p48 Vanderwaltozyma polyspora Kpol_1048p48 I 0.812
Kpol_397p4 Vanderwaltozyma polyspora Kpol_397p4 I 0.771
KUCA_T00000739001 Kuraishia capsulata KUCA_T00000739001 I 0.708
LALA0_S04e02938g Lachancea lanzarotensis LALA0_S04e02938g I 0.896
LEMA_P028590.1 Leptosphaeria maculans LEMA_P028590.1 I 0.750
M437DRAFT_42083 Aureobasidium melanogenum M437DRAFT_42083 I 0.729
M438DRAFT_316511 Aureobasidium pullulans M438DRAFT_316511 I 0.729
M7I_1656 Glarea lozoyensis M7I_1656 I 0.717
MAC_07653 Metarhizium acridum MAC_07653 I 0.708
MAJ_09006 Metarhizium majus MAJ_09006 I 0.708
MANI_022643 Metarhizium anisopliae MANI_022643 I 0.708
MAPG_00433 Magnaporthe poae MAPG_00433 I 0.708
MBM_03922 Marssonina brunnea MBM_03922 I 0.708
MBR_00020 Metarhizium brunneum MBR_00020 I 0.708
MCYG_04979 Arthroderma otae MCYG_04979 I 0.729
MGG_01204 Magnaporthe oryzae MGG_01204 I 0.708
MGU_09177 Metarhizium guizhouense MGU_09177 I 0.708
MGYG_07902 Microsporum gypseum MGYG_07902 I 0.729
MPH_05126 Macrophomina phaseolina MPH_05126 I 0.750
MYCFIDRAFT_72135 Pseudocercospora fijiensis MYCFIDRAFT_72135 I 0.729
Mycgr3G71585 Zymoseptoria tritici Mycgr3G71585 I 0.708
NCAS_0C01980 Naumovozyma castellii NCAS_0C01980 I 0.875
NDAI_0E02700 Naumovozyma dairenensis NDAI_0E02700 I 0.875
NechaG75573 Fusarium solani NechaG75573 I 0.708
NEUTE1DRAFT_126496 Neurospora tetrasperma NEUTE1DRAFT_126496 I 0.729
OIDMADRAFT_105313 Oidiodendron maius OIDMADRAFT_105313 I 0.729
PAAG_00645 Paracoccidioides sp lutzii PAAG_00645 I 0.750
PABG_01574 Paracoccidioides brasiliensis PABG_01574 I 0.750
PAS_chr4_0093 Komagataella pastoris PAS_chr4_0093 I 0.750
PCH_Pc20g03270 Penicillium rubens PCH_Pc20g03270 I 0.708
PDE_01919 Penicillium oxalicum PDE_01919 I 0.708
PDIP_09010 Penicillium digitatum PDIP_09010 I 0.708
PEX1_000400 Penicillium expansum PEX1_000400 I 0.708
PFICI_06921 Pestalotiopsis fici PFICI_06921 I 0.729
PGUG_02571 Meyerozyma guilliermondii PGUG_02571 I 0.750
PICST_68747 Scheffersomyces stipitis PICST_68747 I 0.792
PITC_001660 Penicillium italicum PITC_001660 I 0.708
PMAA_013140 Talaromyces marneffei PMAA_013140 I 0.750
PODANS_1_6600 Podospora anserina PODANS_1_6600 I 0.729
PTRG_08080 Pyrenophora triticirepentis PTRG_08080 I 0.750
PTT_15886 Pyrenophora teres PTT_15886 I 0.750
PV04_07501 Capronia semiimmersa PV04_07501 I 0.729
PV05_05426 Exophiala xenobiotica PV05_05426 I 0.729
PV06_00786 Exophiala oligosperma PV06_00786 I 0.729
PV07_11277 Cladophialophora immunda PV07_11277 I 0.729
PV08_00691 Exophiala spinifera PV08_00691 I 0.729
PV09_04800 Verruconis gallopava PV09_04800 I 0.750
PV10_07771 Exophiala mesophila PV10_07771 I 0.729
PV11_00659 Exophiala sideris PV11_00659 I 0.729
PVAR5_5878 Byssochlamys spectabilis PVAR5_5878 I 0.750
SAPIO_CDS1437 Scedosporium apiospermum SAPIO_CDS1437 I 0.708
SBOR_4659 Sclerotinia borealis SBOR_4659 I 0.729
SEPMUDRAFT_148874 Sphaerulina musiva SEPMUDRAFT_148874 I 0.708
SETTUDRAFT_183592 Setosphaeria turcica SETTUDRAFT_183592 I 0.750
SKUD_178506 Saccharomyces kudriavzevii SKUD_178506 I 0.917
SKUD_205813 Saccharomyces kudriavzevii SKUD_205813 I 1.000
SMAC_05802 Sordaria macrospora SMAC_05802 I 0.729
SPBR_01444 Sporothrix brasiliensis SPBR_01444 I 0.750
SS1G_06124 Sclerotinia sclerotiorum SS1G_06124 I 0.750
SU7_0243 Saccharomyces arboricola SU7_0243 I 0.917
SU7_3566 Saccharomyces arboricola SU7_3566 I 1.000
TBLA_0H03770 Tetrapisispora blattae TBLA_0H03770 I 0.812
TDEL_0A05090 Torulaspora delbrueckii TDEL_0A05090 I 0.833
TEQG_02757 Trichophyton equinum TEQG_02757 I 0.729
TESG_06676 Trichophyton tonsurans TESG_06676 I 0.729
THITE_2122084 Thielavia terrestris THITE_2122084 I 0.750
TPHA_0A01340 Tetrapisispora phaffii TPHA_0A01340 I 0.750
TRIATDRAFT_288492 Trichoderma atroviride TRIATDRAFT_288492 I 0.708
TRIREDRAFT_68097 Trichoderma reesei TRIREDRAFT_68097 I 0.708
TRIVIDRAFT_144166 Trichoderma virens TRIVIDRAFT_144166 I 0.708
TRV_06898 Trichophyton verrucosum TRV_06898 I 0.729
TSTA_004010 Talaromyces stipitatus TSTA_004010 I 0.729
U727_00434011531 Penicillium solitum U727_00434011531 I 0.708
UCREL1_8460 Eutypa lata UCREL1_8460 I 0.708
UCRNP2_3485 Neofusicoccum parvum UCRNP2_3485 I 0.750
UCRPA7_1246 Togninia minima UCRPA7_1246 I 0.729
UREG_07644 Uncinocarpus reesii UREG_07644 I 0.729
UV8b_2080 Ustilaginoidea virens UV8b_2080 I 0.708
V499_02013 Pseudogymnoascus pannorum V499_02013 I 0.729
VDAG_00939 Verticillium dahliae VDAG_00939 I 0.708
VHEMI03693 Torrubiella hemipterigena VHEMI03693 I 0.708
W97_01089 Coniosporium apollinis W97_01089 I 0.750
X797_009919 Metarhizium robertsii X797_009919 I 0.708
YALI0_F18788g Yarrowia lipolytica YALI0_F18788g I 0.729
Z517_02667 Fonsecaea pedrosoi Z517_02667 I 0.729
Z518_09438 Rhinocladiella mackenziei Z518_09438 I 0.729
Z519_11638 Cladophialophora bantiana Z519_11638 I 0.729
ZYRO0A13464g Zygosaccharomyces rouxii ZYRO0A13464g I 0.854
estExt_fgenesh1_pm.C_110082 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_110082 I 0.729
estExt_fgenesh1_pm.C_30002 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30002 I 0.750
estExt_fgenesh2_pg.C_20596 Neurospora discreta estExt_fgenesh2_pg.C_20596 I 0.729
estExt_genewise1_human.C_chr_1.10329 Pichia stipitis estExt_genewise1_human.C_chr_1.10329 I 0.792
fgenesh1_pg.sca_1_chr1_3_0001184 Nectria haematococca fgenesh1_pg.sca_1_chr1_3_0001184 I 0.708
NCU02558 Neurospora crassa NCU02558 I 0.729
Scas_Contig664.4 Saccharomyces castellii Scas_Contig664.4 I 0.875
1645_YBR182C Saccharomyces bayanus 1645_YBR182C I 0.896
1735_Multiple Saccharomyces paradoxus 1735_Multiple I 0.917
21954_YPL089C Saccharomyces mikatae 21954_YPL089C I 1.000
25226_YPL089C Saccharomyces bayanus 25226_YPL089C I 1.000
572_YBR182C Saccharomyces mikatae 572_YBR182C I 0.917
AB03118.1 Alternaria brassicicola AB03118.1 I 0.750
estExt_Genewise1.C_41737 Cryphonectria parasitica estExt_Genewise1.C_41737 I 0.708
fgenesh1_pm.00866_#_723 Aspergillus carbonarius fgenesh1_pm.00866_#_723 I 0.729
KLTH0E13156g Kluyveromyces thermotolerans KLTH0E13156g I 0.833
Pc20g03270 Penicillium chrysogenum Pc20g03270 I 0.708
PMAA_013140 Penicillium marneffei PMAA_013140 I 0.750
SAKL0H09416g Lachancea kluyveri SAKL0H09416g I 0.854
XP_002493499.1 Pichia pastoris XP_002493499.1 I 0.750