Cla009163 (Citrullus lanatus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cla009163 T256955_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.733 0.733
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla009163 MADS box 10 55

Links

Other MADS box family TFs
Other Citrullus lanatus TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GPUH_0002529501 Gongylonema pulchrum GPUH_0002529501 N 0.000
SVE_1011400 Strongyloides venezuelensis SVE_1011400 N 0.000
SSTP_0000308900 Strongyloides stercoralis SSTP_0000308900 N 0.000
SMUV_0001020501 Syphacia muris SMUV_0001020501 N 0.000
scaffold50-EXSNAP2012.1 Pristionchus exspectatus scaffold50-EXSNAP2012.1 N 0.000
RSKR_0000406200 Rhabditophanes kr3021 RSKR_0000406200 N 0.000
PTRK_0000018500 Parastrongyloides trichosuri PTRK_0000018500 N 0.000
nOo.2.0.1.g08044 Onchocerca ochengi nOo.2.0.1.g08044 N 0.000
NECAME_02646 Necator americanus NECAME_02646 N 0.000
nDi.2.2.2.g04775 Dirofilaria immitis nDi.2.2.2.g04775 N 0.000
MhA1_Contig194.frz3.gene8 Meloidogyne hapla MhA1_Contig194.frz3.gene8 N 0.000
L893_g13248 Steinernema glaseri L893_g13248 N 0.000
L892_g23809 Steinernema scapterisci L892_g23809 N 0.000
L596_g18686 Steinernema carpocapsae L596_g18686 N 0.000
WUBG_12380 Wuchereria bancrofti WUBG_12380 N 0.000
BXY_0332200 Bursaphelenchus xylophilus BXY_0332200 N 0.000
BTMF_0000954001 Brugia timori BTMF_0000954001 N 0.000
augustus_masked-nMf.1.1.scaf06448-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06448-processed-gene-0.0 N 0.000
ANCDUO_19443 Ancylostoma duodenale ANCDUO_19443 N 0.000
ANCCEY_02206 Ancylostoma ceylanicum ANCCEY_02206 N 0.000
Minc11538 Meloidogyne incognita Minc11538 N 0.000
WBGene00239074 Onchocerca volvulus WBGene00239074 N 0.000
nhr-32 Caenorhabditis elegans WBGene00003626 N 0.000
LOAG_12834 Loa loa LOAG_12834 N 0.000
CRE19235 Caenorhabditis remanei CRE19235 N 0.000
CJA10118 Caenorhabditis japonica CJA10118 N 0.000
CBN30611 Caenorhabditis brenneri CBN30611 N 0.000
CBG05270 Caenorhabditis briggsae CBG05270 N 0.000