estExt_genewise1_human.C_chr_1.10329 (Pichia stipitis)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 estExt_genewise1_human.C_chr_1.10329 T257339_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SMP1
M01557_2.00 		Saccharomyces cerevisiae
TTAATAAA
TTTATTAA		 PBM
Zhu et al.(2009)
Smp1 		0.812 0.812
SMP1
M08587_2.00 		Saccharomyces cerevisiae
BNDBMYWYAATTRWRNNWVNN
NNBWNNYWYAATTRWRKVHNV		 Misc
DeBoer et al.(2011)
YBR182C_864 		0.812 0.812
RLM1
M08590_2.00 		Saccharomyces cerevisiae
NTAWWWWTAG
CTAWWWWTAN		 Misc
DeBoer et al.(2011)
YPL089C_419 		0.792 0.792
RLM1
M08459_2.00 		Saccharomyces cerevisiae
NDWTCTAWWWATAGMYHN
NDRKCTATWWWTAGAWHN		 COMPILED
Mathelier et al.(2014)
MA0369.1 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_genewise1_human.C_chr_1.10329 MADS box 10 57

Links

Other MADS box family TFs
Other Pichia stipitis TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMP1 Saccharomyces cerevisiae YBR182C D 0.812
RLM1 Saccharomyces cerevisiae YPL089C D 0.792
CIMG_07638 Coccidioides immitis CIMG_07638 I 0.708
CLUG_04340 Candida lusitaniae CLUG_04340 I 0.938
CPAG_01728 Candida parapsilosis CPAG_01728 I 0.896
MCYG_04979 Microsporum canis MCYG_04979 I 0.708
PGUG_02571 Candida guilliermondii PGUG_02571 I 0.854
SNOG_15194 Stagonospora nodorum SNOG_15194 I 0.729
A1O1_05243 Capronia coronata A1O1_05243 I 0.708
A1O3_09529 Capronia epimyces A1O3_09529 I 0.708
A1O5_02336 Cladophialophora psammophila A1O5_02336 I 0.708
A1O7_07076 Cladophialophora yegresii A1O7_07076 I 0.708
A1O9_04901 Exophiala aquamarina A1O9_04901 I 0.708
AGOS_AGR198C Ashbya gossypii AGOS_AGR198C I 0.812
ARB_05322 Arthroderma benhamiae ARB_05322 I 0.708
AUEXF2481DRAFT_43803 Aureobasidium subglaciale AUEXF2481DRAFT_43803 I 0.729
Bcin05g04030 Botrytis cinerea Bcin05g04030 I 0.729
BDDG_00259 Blastomyces dermatitidis BDDG_00259 I 0.729
BGHDH14_bghG002741000001001 Blumeria graminis BGHDH14_bghG002741000001001 I 0.708
BOTBODRAFT_121202 Botryobasidium botryosum BOTBODRAFT_121202 I 0.729
ACLA_036490 Aspergillus clavatus CADACLAG00003970 I 0.750
CADAFLAG00001438 Aspergillus flavus CADAFLAG00001438 I 0.750
AFUA_3G08520 Aspergillus fumigatus CADAFUAG00005633 I 0.750
CADANGAG00002744 Aspergillus niger CADANGAG00002744 I 0.750
ANIA_02984 Aspergillus nidulans CADANIAG00010096 I 0.750
CADAORAG00003304 Aspergillus oryzae CADAORAG00003304 I 0.750
ATEG_01619 Aspergillus terreus CADATEAG00002690 I 0.750
NFIA_068610 Neosartorya fischeri CADNFIAG00006321 I 0.750
CAGL0H05621g Candida glabrata CAGL0H05621g I 0.771
CANTEDRAFT_125008 Candida tenuis CANTEDRAFT_125008 I 0.938
CaO19.12132 Candida albicans CaO19.12132 I 0.917
CaO19.4662 Candida albicans CaO19.4662 I 0.917
CD36_41250 Candida dubliniensis CD36_41250 I 0.938
CFIO01_13635 Colletotrichum fioriniae CFIO01_13635 I 0.708
CH063_12469 Colletotrichum higginsianum CH063_12469 I 0.708
CLUG_04340 Clavispora lusitaniae CLUG_04340 I 0.938
CMQ_3522 Grosmannia clavigera CMQ_3522 I 0.708
Cob_13332 Colletotrichum orbiculare Cob_13332 I 0.708
COCC4DRAFT_131332 Bipolaris maydis COCC4DRAFT_131332 I 0.729
COCCADRAFT_38888 Bipolaris zeicola COCCADRAFT_38888 I 0.729
COCMIDRAFT_27992 Bipolaris oryzae COCMIDRAFT_27992 I 0.729
COCSADRAFT_191180 Bipolaris sorokiniana COCSADRAFT_191180 I 0.729
COCVIDRAFT_17132 Bipolaris victoriae COCVIDRAFT_17132 I 0.729
CORT_0E04370 Candida orthopsilosis CORT_0E04370 I 0.917
CPC735_043100 Coccidioides posadasii CPC735_043100 I 0.708
CSUB01_02910 Colletotrichum sublineola CSUB01_02910 I 0.708
CTRG_00027 Candida tropicalis CTRG_00027 I 0.958
DEHA2B02882g Debaryomyces hansenii DEHA2B02882g I 0.958
DOTSEDRAFT_71657 Dothistroma septosporum DOTSEDRAFT_71657 I 0.729
Ecym_7060 Eremothecium cymbalariae Ecym_7060 I 0.812
EPUS_00923 Endocarpon pusillum EPUS_00923 I 0.729
EURHEDRAFT_408541 Aspergillus ruber EURHEDRAFT_408541 I 0.750
EV44_g2988 Erysiphe necator EV44_g2988 I 0.729
F503_03505 Ophiostoma piceae uamh F503_03505 I 0.729
G210_1171 Candida maltosa G210_1171 I 0.938
G647_03030 Cladophialophora carrionii G647_03030 I 0.708
GLRG_00647 Colletotrichum graminicola GLRG_00647 I 0.708
GMDG_00759 Pseudogymnoascus destructans GMDG_00759 I 0.708
GNLVRS01_PISO0M22936g Millerozyma farinosa GNLVRS01_PISO0M22936g I 0.917
GNLVRS01_PISO0N23201g Millerozyma farinosa GNLVRS01_PISO0N23201g I 0.938
GSTUM_00008714001 Tuber melanosporum GSTUM_00008714001 I 0.729
H101_08129 Trichophyton interdigitale H101_08129 I 0.708
H102_05233 Trichophyton rubrum H102_05233 I 0.708
H105_05252 Trichophyton soudanense H105_05252 I 0.708
HCBG_00204 Histoplasma capsulatum HCBG_00204 I 0.729
HMPREF1120_02025 Exophiala dermatitidis HMPREF1120_02025 I 0.708
HMPREF1541_07944 Cyphellophora europaea HMPREF1541_07944 I 0.729
HMPREF1624_03092 Sporothrix schenckii HMPREF1624_03092 I 0.729
HPODL_00493 Ogataea parapolymorpha HPODL_00493 I 0.750
JL09_g2233 Pichia kudriavzevii JL09_g2233 I 0.812
KAFR_0E00800 Kazachstania africana KAFR_0E00800 I 0.771
KAFR_0I00730 Kazachstania africana KAFR_0I00730 I 0.792
KLLA0_E24025g Kluyveromyces lactis KLLA0_E24025g I 0.812
KLTH0E13156g Lachancea thermotolerans KLTH0E13156g I 0.792
KNAG_0A01830 Kazachstania naganishii KNAG_0A01830 I 0.750
Kpol_1048p48 Vanderwaltozyma polyspora Kpol_1048p48 I 0.750
KUCA_T00000739001 Kuraishia capsulata KUCA_T00000739001 I 0.729
LALA0_S04e02938g Lachancea lanzarotensis LALA0_S04e02938g I 0.833
LELG_04554 Lodderomyces elongisporus LELG_04554 I 0.896
LEMA_P028590.1 Leptosphaeria maculans LEMA_P028590.1 I 0.729
M437DRAFT_42083 Aureobasidium melanogenum M437DRAFT_42083 I 0.729
M438DRAFT_316511 Aureobasidium pullulans M438DRAFT_316511 I 0.729
MCYG_04979 Arthroderma otae MCYG_04979 I 0.708
MGYG_07902 Microsporum gypseum MGYG_07902 I 0.708
MPH_05126 Macrophomina phaseolina MPH_05126 I 0.729
MYCFIDRAFT_72135 Pseudocercospora fijiensis MYCFIDRAFT_72135 I 0.729
Mycgr3G71585 Zymoseptoria tritici Mycgr3G71585 I 0.708
NCAS_0C01980 Naumovozyma castellii NCAS_0C01980 I 0.854
NDAI_0E02700 Naumovozyma dairenensis NDAI_0E02700 I 0.833
NEUTE1DRAFT_126496 Neurospora tetrasperma NEUTE1DRAFT_126496 I 0.708
OIDMADRAFT_105313 Oidiodendron maius OIDMADRAFT_105313 I 0.708
PAAG_00645 Paracoccidioides sp lutzii PAAG_00645 I 0.750
PABG_01574 Paracoccidioides brasiliensis PABG_01574 I 0.750
PAS_chr4_0093 Komagataella pastoris PAS_chr4_0093 I 0.750
PCH_Pc20g03270 Penicillium rubens PCH_Pc20g03270 I 0.729
PDE_01919 Penicillium oxalicum PDE_01919 I 0.729
PDIP_09010 Penicillium digitatum PDIP_09010 I 0.729
PEX1_000400 Penicillium expansum PEX1_000400 I 0.729
PFICI_06921 Pestalotiopsis fici PFICI_06921 I 0.708
PGUG_02571 Meyerozyma guilliermondii PGUG_02571 I 0.854
PICST_68747 Scheffersomyces stipitis PICST_68747 I 1.000
PITC_001660 Penicillium italicum PITC_001660 I 0.729
PMAA_013140 Talaromyces marneffei PMAA_013140 I 0.729
PODANS_1_6600 Podospora anserina PODANS_1_6600 I 0.708
PTRG_08080 Pyrenophora triticirepentis PTRG_08080 I 0.729
PTT_15886 Pyrenophora teres PTT_15886 I 0.729
PV04_07501 Capronia semiimmersa PV04_07501 I 0.708
PV05_05426 Exophiala xenobiotica PV05_05426 I 0.708
PV06_00786 Exophiala oligosperma PV06_00786 I 0.708
PV07_11277 Cladophialophora immunda PV07_11277 I 0.708
PV08_00691 Exophiala spinifera PV08_00691 I 0.708
PV09_04800 Verruconis gallopava PV09_04800 I 0.729
PV10_07771 Exophiala mesophila PV10_07771 I 0.708
PV11_00659 Exophiala sideris PV11_00659 I 0.708
PVAR5_5878 Byssochlamys spectabilis PVAR5_5878 I 0.729
SAPIO_CDS1437 Scedosporium apiospermum SAPIO_CDS1437 I 0.708
SBOR_4659 Sclerotinia borealis SBOR_4659 I 0.708
SEPMUDRAFT_148874 Sphaerulina musiva SEPMUDRAFT_148874 I 0.708
SETTUDRAFT_183592 Setosphaeria turcica SETTUDRAFT_183592 I 0.729
SKUD_178506 Saccharomyces kudriavzevii SKUD_178506 I 0.812
SKUD_205813 Saccharomyces kudriavzevii SKUD_205813 I 0.792
SMAC_05802 Sordaria macrospora SMAC_05802 I 0.708
SPBR_01444 Sporothrix brasiliensis SPBR_01444 I 0.729
SS1G_06124 Sclerotinia sclerotiorum SS1G_06124 I 0.729
SU7_0243 Saccharomyces arboricola SU7_0243 I 0.792
SU7_3566 Saccharomyces arboricola SU7_3566 I 0.792
TBLA_0H03770 Tetrapisispora blattae TBLA_0H03770 I 0.708
TDEL_0A05090 Torulaspora delbrueckii TDEL_0A05090 I 0.792
TEQG_02757 Trichophyton equinum TEQG_02757 I 0.708
TESG_06676 Trichophyton tonsurans TESG_06676 I 0.708
THITE_2122084 Thielavia terrestris THITE_2122084 I 0.729
TRV_06898 Trichophyton verrucosum TRV_06898 I 0.708
TSTA_004010 Talaromyces stipitatus TSTA_004010 I 0.708
U727_00434011531 Penicillium solitum U727_00434011531 I 0.729
UCRNP2_3485 Neofusicoccum parvum UCRNP2_3485 I 0.729
UCRPA7_1246 Togninia minima UCRPA7_1246 I 0.708
UREG_07644 Uncinocarpus reesii UREG_07644 I 0.708
V499_02013 Pseudogymnoascus pannorum V499_02013 I 0.708
V565_186740 Rhizoctonia solani V565_186740 I 0.708
W97_01089 Coniosporium apollinis W97_01089 I 0.729
YALI0_F18788g Yarrowia lipolytica YALI0_F18788g I 0.750
Z517_02667 Fonsecaea pedrosoi Z517_02667 I 0.708
Z518_09438 Rhinocladiella mackenziei Z518_09438 I 0.708
Z519_11638 Cladophialophora bantiana Z519_11638 I 0.708
ZYRO0A13464g Zygosaccharomyces rouxii ZYRO0A13464g I 0.812
estExt_fgenesh1_pm.C_110082 Mycosphaerella fijiensis estExt_fgenesh1_pm.C_110082 I 0.729
estExt_fgenesh1_pm.C_30002 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_30002 I 0.729
estExt_fgenesh2_pg.C_20596 Neurospora discreta estExt_fgenesh2_pg.C_20596 I 0.708
NCU02558 Neurospora crassa NCU02558 I 0.708
Scas_Contig664.4 Saccharomyces castellii Scas_Contig664.4 I 0.854
1645_YBR182C Saccharomyces bayanus 1645_YBR182C I 0.792
1735_Multiple Saccharomyces paradoxus 1735_Multiple I 0.812
21954_YPL089C Saccharomyces mikatae 21954_YPL089C I 0.792
25226_YPL089C Saccharomyces bayanus 25226_YPL089C I 0.792
572_YBR182C Saccharomyces mikatae 572_YBR182C I 0.812
AB03118.1 Alternaria brassicicola AB03118.1 I 0.729
fgenesh1_pm.00866_#_723 Aspergillus carbonarius fgenesh1_pm.00866_#_723 I 0.750
KLTH0E13156g Kluyveromyces thermotolerans KLTH0E13156g I 0.792
Pc20g03270 Penicillium chrysogenum Pc20g03270 I 0.729
PMAA_013140 Penicillium marneffei PMAA_013140 I 0.729
SAKL0H09416g Lachancea kluyveri SAKL0H09416g I 0.833
XP_002493499.1 Pichia pastoris XP_002493499.1 I 0.750
WALSEDRAFT_59614 Wallemia sebi WALSEDRAFT_59614 N 0.729