Bostr.2392s0039 (Boechera stricta)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Bostr.2392s0039 T257602_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.867 0.867
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.2392s0039.1.p MADS box 10 57

Links

Other MADS box family TFs
Other Boechera stricta TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N 0.000
SapurV1A.0162s0340 Salix purpurea SapurV1A.0162s0340 N 0.000
SapurV1A.0151s0200 Salix purpurea SapurV1A.0151s0200 N 0.000
SapurV1A.0003s0430 Salix purpurea SapurV1A.0003s0430 N 0.000
Lus10009475.g Linum usitatissimum Lus10009475.g N 0.000
Lus10001271.g Linum usitatissimum Lus10001271.g N 0.000
gene16221-v1.0-hybrid Fragaria vesca gene16221-v1.0-hybrid N 0.000
evm.TU.supercontig_55.64 Carica papaya evm.TU.supercontig_55.64 N 0.000
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N 0.000
TRIUR3_09788 Triticum urartu TRIUR3_09788 N 0.000
Si013925m.g Setaria italica Si013925m.g N 0.000
POPTR_0014s10190 Populus trichocarpa POPTR_0014s10190 N 0.000
POPTR_0002s18100 Populus trichocarpa POPTR_0002s18100 N 0.000
OS03G0188400 Oryza sativa OS03G0188400 N 0.000
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N 0.000
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.000
ONIVA02G06380 Oryza nivara ONIVA02G06380 N 0.000
OMERI03G06350 Oryza meridionalis OMERI03G06350 N 0.000
OLONG_001045 Oryza longistaminata OLONG_001045 N 0.000
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N 0.000
OBART03G06470 Oryza barthii OBART03G06470 N 0.000
MLOC_67417 Hordeum vulgare MLOC_67417 N 0.000
LPERR03G05820 Leersia perrieri LPERR03G05820 N 0.000
GSMUA_Achr8G12330_001 Musa acuminata GSMUA_Achr8G12330_001 N 0.000
GSMUA_Achr7G12790_001 Musa acuminata GSMUA_Achr7G12790_001 N 0.000
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N 0.000
GSMUA_Achr3G06660_001 Musa acuminata GSMUA_Achr3G06660_001 N 0.000
GSMUA_Achr11G02740_001 Musa acuminata GSMUA_Achr11G02740_001 N 0.000
GSMUA_Achr10G30300_001 Musa acuminata GSMUA_Achr10G30300_001 N 0.000
BGIOSGA012015 Oryza indica BGIOSGA012015 N 0.000