Carubv10016398m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10016398m.g T257781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL57
M10917_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G04100_01 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016398m MADS box 3 50

Links

Other MADS box family TFs
Other Capsella rubella TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF449 Homo sapiens ENSG00000173275 D
Zfp449 Rattus norvegicus ENSRNOG00000050562 I
ENSNLEG00000002174 Nomascus leucogenys ENSNLEG00000002174 I
ZNF449 Oryctolagus cuniculus ENSOCUG00000014649 I
ZNF449 Otolemur garnettii ENSOGAG00000003684 I
ENSPANG00000012789 Papio anubis ENSPANG00000012789 I
ENSPPYG00000020749 Pongo abelii ENSPPYG00000020749 I
ZNF449 Pan troglodytes ENSPTRG00000022299 I
ZNF449 Pteropus vampyrus ENSPVAG00000006757 I
ENSMPUG00000012654 Mustela putorius furo ENSMPUG00000012654 I
ZNF449 Sus scrofa ENSSSCG00000012691 I
ENSSTOG00000024213 Ictidomys tridecemlineatus ENSSTOG00000024213 I
ZNF449 Tursiops truncatus ENSTTRG00000010555 I
ZNF449 Vicugna pacos ENSVPAG00000002342 I
ENSBTAP00000024080-D1 Bos grunniens ENSBTAP00000024080-D1 I
ENSP00000339585 Macaca fascicularis ENSP00000339585 I
Myotis_brandtii_ZNF449_10001399 Myotis brandtii Myotis_brandtii_ZNF449_10001399 I
Zfp449 Mus musculus ENSMUSG00000073176 I
ENSAMEG00000011267 Ailuropoda melanoleuca ENSAMEG00000011267 I
ZNF449 Macaca mulatta ENSMMUG00000008108 I
ZNF449 Microcebus murinus ENSMICG00000003164 I
ENSLAFG00000017131 Loxodonta africana ENSLAFG00000017131 I
ZNF449 Gorilla gorilla ENSGGOG00000000032 I
ENSFCAG00000024967 Felis catus ENSFCAG00000024967 I
ENSETEG00000009064 Echinops telfairi ENSETEG00000009064 I
ENSEEUG00000003860 Erinaceus europaeus ENSEEUG00000003860 I
ZNF449 Equus caballus ENSECAG00000003581 I
Zfp449 Dipodomys ordii ENSDORG00000003522 I
ENSCSAG00000007689 Chlorocebus sabaeus ENSCSAG00000007689 I
ENSCPOG00000004042 Cavia porcellus ENSCPOG00000004042 I
ZNF449 Callithrix jacchus ENSCJAG00000014517 I
ZNF449 Canis familiaris ENSCAFG00000018905 I
ZNF449 Bos taurus ENSBTAG00000018090 I