Carubv10016398m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10016398m.g T257781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL57
M10917_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G04100_01 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016398m MADS box 3 50

Links

Other MADS box family TFs
Other Capsella rubella TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.4031s0057 Capsella grandiflora Cagra.4031s0057 I 1.000
Bostr.2570s0298 Boechera stricta Bostr.2570s0298 I 0.833
AGL57 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3000303 I 0.812
AGL57 Arabidopsis thaliana AT3G04100 D 0.792
Thhalv10022229m.g Eutrema salsugineum Thhalv10022229m.g I 0.750