Ciclev10024463m.g (Citrus clementina)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Ciclev10024463m.g T257902_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.804 0.804
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10024463m MADS box 10 56

Links

Other MADS box family TFs
Other Citrus clementina TFs

74 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RUNX1 Homo sapiens ENSG00000159216 D 0.000
Runx1 Mus musculus ENSMUSG00000022952 D 0.000
lz Drosophila melanogaster FBgn0002576 D 0.000
run Drosophila melanogaster FBgn0003300 D 0.000
CpipJ_CPIJ001309 Culex pipiens CpipJ_CPIJ001309 I 0.000
CpipJ_CPIJ006372 Culex pipiens CpipJ_CPIJ006372 I 0.000
CpipJ_CPIJ006373 Culex pipiens CpipJ_CPIJ006373 I 0.000
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.000
AAEL006160 Aedes aegypti AAEL006160 I 0.000
AAEL006167 Aedes aegypti AAEL006167 I 0.000
AAEL007040 Aedes aegypti AAEL007040 I 0.000
ACEP16400 Atta cephalotes ACEP16400 I 0.000
ACEP16410 Atta cephalotes ACEP16410 I 0.000
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.000
ACYPI006937 Acyrthosiphon pisum ACYPI006937 I 0.000
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.000
AGAP001094 Anopheles gambiae AGAP001094 I 0.000
AGAP002506 Anopheles gambiae AGAP002506 I 0.000
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.000
CGI_10005366 Crassostrea gigas CGI_10005366 I 0.000
CPIJ001309 Culex quinquefasciatus CPIJ001309 I 0.000
CPIJ006372 Culex quinquefasciatus CPIJ006372 I 0.000
CPIJ006373 Culex quinquefasciatus CPIJ006373 I 0.000
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.000
DAPPUDRAFT_290554 Daphnia pulex DAPPUDRAFT_290554 I 0.000
DAPPUDRAFT_290555 Daphnia pulex DAPPUDRAFT_290555 I 0.000
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.000
RUNX3 Anolis carolinensis ENSACAG00000017855 I 0.000
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.000
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.000
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.000
ENSAPLG00000011653 Anas platyrhynchos ENSAPLG00000011653 I 0.000
RUNX3 Bos taurus ENSBTAG00000019800 I 0.000
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.000
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.000
ENSCING00000002253 Ciona intestinalis ENSCING00000002253 I 0.000
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.000
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.000
runx1 Danio rerio ENSDARG00000087646 I 0.000
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.000
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.000
RUNX1 Equus caballus ENSECAG00000003462 I 0.000
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.000
RUNX2 Felis catus ENSFCAG00000022480 I 0.000
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.000
RUNX1 Gallus gallus ENSGALG00000016022 I 0.000
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.000
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.000
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.000
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.000
RUNX2 Meleagris gallopavo ENSMGAG00000014267 I 0.000
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.000
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.000
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.000
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.000
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.000
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.000
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.000
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.000
ENSNLEG00000009021 Nomascus leucogenys ENSNLEG00000009021 I 0.000
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.000
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.000
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.000
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.000
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.000
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.000
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.000
ENSPSIG00000014293 Pelodiscus sinensis ENSPSIG00000014293 I 0.000
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.000
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.000
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.000
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.000
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.000
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.000
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.000
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.000
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.000
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.000
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.000
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.000
run Drosophila pseudoobscura FBgn0013862 I 0.000
run Drosophila virilis FBgn0013920 I 0.000
run Drosophila simulans FBgn0016352 I 0.000
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.000
RunxA Drosophila melanogaster FBgn0083981 I 0.000
run Drosophila yakuba FBgn0084618 I 0.000
run Drosophila erecta FBgn0085118 I 0.000
GF15967 Drosophila ananassae FBgn0092990 I 0.000
GF15970 Drosophila ananassae FBgn0092993 I 0.000
GF15983 Drosophila ananassae FBgn0093006 I 0.000
GG17578 Drosophila erecta FBgn0109803 I 0.000
GG18309 Drosophila erecta FBgn0110525 I 0.000
GG19691 Drosophila erecta FBgn0111893 I 0.000
GH17737 Drosophila grimshawi FBgn0125207 I 0.000
GH17740 Drosophila grimshawi FBgn0125210 I 0.000
GH17774 Drosophila grimshawi FBgn0125244 I 0.000
GI14398 Drosophila mojavensis FBgn0137150 I 0.000
GI15119 Drosophila mojavensis FBgn0137869 I 0.000
GI15484 Drosophila mojavensis FBgn0138233 I 0.000
GI15491 Drosophila mojavensis FBgn0138240 I 0.000
GL15800 Drosophila persimilis FBgn0153404 I 0.000
GL15806 Drosophila persimilis FBgn0153410 I 0.000
GL15927 Drosophila persimilis FBgn0153531 I 0.000
GL16499 Drosophila persimilis FBgn0154103 I 0.000
GM22478 Drosophila sechellia FBgn0177348 I 0.000
GM22662 Drosophila sechellia FBgn0177532 I 0.000
GM23044 Drosophila sechellia FBgn0177912 I 0.000
GM23050 Drosophila sechellia FBgn0177918 I 0.000
GD16951 Drosophila simulans FBgn0188530 I 0.000
GD17495 Drosophila simulans FBgn0189047 I 0.000
GJ18742 Drosophila virilis FBgn0205894 I 0.000
GJ18917 Drosophila virilis FBgn0206063 I 0.000
GJ19245 Drosophila virilis FBgn0206390 I 0.000
GK19810 Drosophila willistoni FBgn0221808 I 0.000
GK19815 Drosophila willistoni FBgn0221813 I 0.000
GK20052 Drosophila willistoni FBgn0222049 I 0.000
GK25373 Drosophila willistoni FBgn0227332 I 0.000
GE15340 Drosophila yakuba FBgn0232921 I 0.000
GE17788 Drosophila yakuba FBgn0235232 I 0.000
GE17890 Drosophila yakuba FBgn0235328 I 0.000
GA22609 Drosophila pseudoobscura FBgn0244012 I 0.000
GA25684 Drosophila pseudoobscura FBgn0247061 I 0.000
RunxB Drosophila melanogaster FBgn0259162 I 0.000
GB52718 Apis mellifera GB52718 I 0.000
GB52719 Apis mellifera GB52719 I 0.000
GB52721 Apis mellifera GB52721 I 0.000
GB52761 Apis mellifera GB52761 I 0.000
HMEL009842 Heliconius melpomene HMEL009842 I 0.000
HMEL009843 Heliconius melpomene HMEL009843 I 0.000
HMEL014739 Heliconius melpomene HMEL014739 I 0.000
ISCW004493 Ixodes scapularis ISCW004493 I 0.000
ISCW023333 Ixodes scapularis ISCW023333 I 0.000
KGM_02818 Danaus plexippus KGM_02818 I 0.000
KGM_21065 Danaus plexippus KGM_21065 I 0.000
KGM_21067 Danaus plexippus KGM_21067 I 0.000
KGM_21075 Danaus plexippus KGM_21075 I 0.000
L798_10922 Zootermopsis nevadensis L798_10922 I 0.000
LotgiG96224 Lottia gigantea LotgiG96224 I 0.000
MCINX000302 Melitaea cinxia MCINX000302 I 0.000
MCINX005905 Melitaea cinxia MCINX005905 I 0.000
MCINX005906 Melitaea cinxia MCINX005906 I 0.000
MESCA003521 Megaselia scalaris MESCA003521 I 0.000
MESCA007078 Megaselia scalaris MESCA007078 I 0.000
MESCA007079 Megaselia scalaris MESCA007079 I 0.000
NEMVEDRAFT_v1g129231 Nematostella vectensis NEMVEDRAFT_v1g129231 I 0.000
NV10998 Nasonia vitripennis NV10998 I 0.000
NV11000 Nasonia vitripennis NV11000 I 0.000
NV17759 Nasonia vitripennis NV17759 I 0.000
NV17793 Nasonia vitripennis NV17793 I 0.000
PHUM333300 Pediculus humanus PHUM333300 I 0.000
PHUM333310 Pediculus humanus PHUM333310 I 0.000
PHUM333320 Pediculus humanus PHUM333320 I 0.000
PHUM333340 Pediculus humanus PHUM333340 I 0.000
RPRC005391 Rhodnius prolixus RPRC005391 I 0.000
SINV13317 Solenopsis invicta SINV13317 I 0.000
SINV13345 Solenopsis invicta SINV13345 I 0.000
SINV13356 Solenopsis invicta SINV13356 I 0.000
SINV13363 Solenopsis invicta SINV13363 I 0.000
SMAR009403 Strigamia maritima SMAR009403 I 0.000
TC005566 Tribolium castaneum TC005566 I 0.000
TC005796 Tribolium castaneum TC005796 I 0.000
TC006536 Tribolium castaneum TC006536 I 0.000
TC006542 Tribolium castaneum TC006542 I 0.000
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.000
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.000
Aan_R005895 Calypte anna Aan_R005895 I 0.000
Aan_R007315 Calypte anna Aan_R007315 I 0.000
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.000
Afo_R008955 Aptenodytes forsteri Afo_R008955 I 0.000
Alligator_sinensis_CCG010991.1 Alligator sinensis Alligator_sinensis_CCG010991.1 I 0.000
Brh_R000794 Buceros rhinoceros Brh_R000794 I 0.000
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.000
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.000
Cflo_03910--XP_001121886.1_APIME Camponotus floridanus Cflo_03910--XP_001121886.1_APIME I 0.000
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.000
Cflo_03913--XP_394013.3_APIME Camponotus floridanus Cflo_03913--XP_394013.3_APIME I 0.000
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.000
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.000
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.000
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.000
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.000
Hsal_12321--XP_001121886.1_APIME Harpegnathos saltator Hsal_12321--XP_001121886.1_APIME I 0.000
Hsal_12322--XP_394014.2_APIME Harpegnathos saltator Hsal_12322--XP_394014.2_APIME I 0.000
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.000
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.000
Tal_R011874 Tyto alba Tal_R011874 I 0.000
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.000
CLEC011122 Cimex lectularius CLEC011122 I 0.000
LCUP002652 Lucilia cuprina LCUP002652 I 0.000
LCUP002656 Lucilia cuprina LCUP002656 I 0.000
LCUP002659 Lucilia cuprina LCUP002659 I 0.000
LDEC003023 Leptinotarsa decemlineata LDEC003023 I 0.000
LDEC006645 Leptinotarsa decemlineata LDEC006645 I 0.000
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.000
XP_002939386 Xenopus tropicalis XP_002939386 I 0.000
XP_002939387 Xenopus tropicalis XP_002939387 I 0.000
XP_002939388 Xenopus tropicalis XP_002939388 I 0.000
XP_002165633.1 Hydra magnipapillata XP_002165633.1 I 0.000
AALB007752 Anopheles albimanus AALB007752 I 0.000
AALB007753 Anopheles albimanus AALB007753 I 0.000
AALB007754 Anopheles albimanus AALB007754 I 0.000
AALB009220 Anopheles albimanus AALB009220 I 0.000
AARA004356 Anopheles arabiensis AARA004356 I 0.000
AATE002063 Anopheles atroparvus AATE002063 I 0.000
AATE017340 Anopheles atroparvus AATE017340 I 0.000
ACHR004078 Anopheles christyi ACHR004078 I 0.000
ACHR006341 Anopheles christyi ACHR006341 I 0.000
ACOM031089 Anopheles coluzzii ACOM031089 I 0.000
ACUA000036 Anopheles culicifacies ACUA000036 I 0.000
ACUA016618 Anopheles culicifacies ACUA016618 I 0.000
ADIR005600 Anopheles dirus ADIR005600 I 0.000
AEPI003479 Anopheles epiroticus AEPI003479 I 0.000
AEPI010884 Anopheles epiroticus AEPI010884 I 0.000
AEPI011470 Anopheles epiroticus AEPI011470 I 0.000
AFAF000166 Anopheles farauti AFAF000166 I 0.000
AFUN005474 Anopheles funestus AFUN005474 I 0.000
AFUN010423 Anopheles funestus AFUN010423 I 0.000
AMAM011616 Anopheles maculatus AMAM011616 I 0.000
AMAM016300 Anopheles maculatus AMAM016300 I 0.000
AMEC007551 Anopheles melas AMEC007551 I 0.000
AMEM004753 Anopheles merus AMEM004753 I 0.000
AMEM017856 Anopheles merus AMEM017856 I 0.000
AMIN002518 Anopheles minimus AMIN002518 I 0.000
AMIN005759 Anopheles minimus AMIN005759 I 0.000
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.000
AQUA009446 Anopheles quadriannulatus AQUA009446 I 0.000
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.000
ASIS001308 Anopheles sinensis ASIS001308 I 0.000
ASIS002518 Anopheles sinensis ASIS002518 I 0.000
ASTEI07770 Anopheles stephensi ASTEI07770 I 0.000
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.000
ASTEI07959 Anopheles stephensi ASTEI07959 I 0.000
LLOJ002717 Lutzomyia longipalpis LLOJ002717 I 0.000
MDOA009046 Musca domestica MDOA009046 I 0.000
MDOA011942 Musca domestica MDOA011942 I 0.000
MDOA013149 Musca domestica MDOA013149 I 0.000
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.000
PPAI010986 Phlebotomus papatasi PPAI010986 I 0.000
LCUP002653 Lucilia cuprina LCUP002653 N 0.000