HMEL009842 (Heliconius melpomene)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 HMEL009842 T319578_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
lz
M03964_2.00 		Drosophila melanogaster
HRACCGCAAHM
KDTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_1 		0.872 0.872
lz
M03965_2.00 		Drosophila melanogaster
HVACCRCARWAACCRCAV
BTGYGGTTWYTGYGGTBD		 SELEX
Nitta et al.(2015)
lz_2 		0.872 0.872
lz
M03966_2.00 		Drosophila melanogaster
WRACCRCAWTAACCRCAA
TTGYGGTTAWTGYGGTYW		 SELEX
Nitta et al.(2015)
lz_3 		0.872 0.872
lz
M03967_2.00 		Drosophila melanogaster
HRACCGCAAAACCRCAR
YTGYGGTTTTGCGGTYD		 SELEX
Nitta et al.(2015)
lz_4 		0.872 0.872
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.769 0.769
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.769 0.769
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.769 0.769
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.769 0.769
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.769 0.769
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.769 0.769
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.769 0.769
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.769 0.769
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.769 0.769
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.769 0.769
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.769 0.769
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.769 0.769
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.744 0.744
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.744 0.744
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.744 0.744
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.744 0.744
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.744 0.744
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.744 0.744
run
M06444_2.00 		Drosophila melanogaster
WAACCGCAR
YTGCGGTTW		 B1H
Zhu et al.(2011)
run_Bgb_NBT_FBgn0003300 		0.744 0.744
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.744 0.744
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.744 0.744
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.744 0.744
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.744 0.744
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.744 0.744
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.744 0.744
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.744 0.744
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.744 0.744
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.744 0.744
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.744 0.744
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.744 0.744
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.744 0.744
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.744 0.744
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.744 0.744
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.744 0.744
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.744 0.744
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.744 0.744
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.744 0.744
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HMEL009842-PA Runt 1 39

Links

Other Runt family TFs
Other Heliconius melpomene TFs

172 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CpipJ_CPIJ006373 Culex pipiens CpipJ_CPIJ006373 I 0.923
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.923
CPIJ006373 Culex quinquefasciatus CPIJ006373 I 0.923
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.923
PPAI007797 Phlebotomus papatasi PPAI007797 I 0.923
AMAM011616 Anopheles maculatus AMAM011616 I 0.920
AQUA009446 Anopheles quadriannulatus AQUA009446 I 0.920
AAEL006160 Aedes aegypti AAEL006160 I 0.897
AATE002063 Anopheles atroparvus AATE002063 I 0.897
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.897
LLOJ002717 Lutzomyia longipalpis LLOJ002717 I 0.897
lz Drosophila melanogaster FBgn0002576 D 0.872
GG18309 Drosophila erecta FBgn0110525 I 0.872
GL16499 Drosophila persimilis FBgn0154103 I 0.872
GM22478 Drosophila sechellia FBgn0177348 I 0.872
GD16951 Drosophila simulans FBgn0188530 I 0.872
GE17788 Drosophila yakuba FBgn0235232 I 0.872
GA22609 Drosophila pseudoobscura FBgn0244012 I 0.872
TC006536 Tribolium castaneum TC006536 I 0.872
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.872
CLEC011124 Cimex lectularius CLEC011124 I 0.872
AFAF013225 Anopheles farauti AFAF013225 I 0.872
MESCA007078 Megaselia scalaris MESCA007078 I 0.865
ACEP16400 Atta cephalotes ACEP16400 I 0.857
AALB007752 Anopheles albimanus AALB007752 I 0.850
ACEP16406 Atta cephalotes ACEP16406 I 0.846
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.846
RPRC005391 Rhodnius prolixus RPRC005391 I 0.846
SINV13317 Solenopsis invicta SINV13317 I 0.846
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.846
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.846
LCUP002647 Lucilia cuprina LCUP002647 I 0.846
LDEC020504 Leptinotarsa decemlineata LDEC020504 N 0.846
ADIR002676 Anopheles dirus ADIR002676 I 0.846
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.821
LCUP002656 Lucilia cuprina LCUP002656 I 0.810
CpipJ_CPIJ016825 Culex pipiens CpipJ_CPIJ016825 I 0.800
CPIJ016825 Culex quinquefasciatus CPIJ016825 I 0.800
HMEL014739 Heliconius melpomene HMEL014739 I 0.800
KGM_21065 Danaus plexippus KGM_21065 I 0.800
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.795
DAPPUDRAFT_290556 Daphnia pulex DAPPUDRAFT_290556 N 0.795
MCINX000302 Melitaea cinxia MCINX000302 I 0.795
PHUM333340 Pediculus humanus PHUM333340 I 0.795
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.795
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.795
CLEC011126 Cimex lectularius CLEC011126 N 0.795
PPAI006591 Phlebotomus papatasi PPAI006591 I 0.792
MCINX000297 Melitaea cinxia MCINX000297 N 0.774
ACEP16410 Atta cephalotes ACEP16410 I 0.769
BGIBMGA008906 Bombyx mori BGIBMGA008906 I 0.769
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.769
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.769
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.769
RUNX2 Bos taurus ENSBTAG00000004104 I 0.769
ENSCAFG00000031052 Canis familiaris ENSCAFG00000031052 I 0.769
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.769
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.769
runx2a Danio rerio ENSDARG00000040261 I 0.769
runx3 Danio rerio ENSDARG00000052826 I 0.769
runx2b Danio rerio ENSDARG00000059233 I 0.769
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.769
RUNX2 Equus caballus ENSECAG00000020875 I 0.769
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.769
ENSFALG00000001493 Ficedula albicollis ENSFALG00000001493 I 0.769
RUNX2 Homo sapiens ENSG00000124813 D 0.769
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.769
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.769
ENSGALG00000026484 Gallus gallus ENSGALG00000026484 I 0.769
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.769
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.769
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.769
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.769
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.769
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.769
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.769
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.769
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.769
Runx2 Mus musculus ENSMUSG00000039153 D 0.769
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.769
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.769
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.769
runx3 Oryzias latipes ENSORLG00000017515 I 0.769
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.769
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.769
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.769
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.769
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.769
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.769
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.769
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.769
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.769
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.769
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.769
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.769
GA13742 Drosophila pseudoobscura FBgn0073778 I 0.769
GF15967 Drosophila ananassae FBgn0092990 I 0.769
GG19691 Drosophila erecta FBgn0111893 I 0.769
GH17737 Drosophila grimshawi FBgn0125207 I 0.769
GL15800 Drosophila persimilis FBgn0153404 I 0.769
GM23044 Drosophila sechellia FBgn0177912 I 0.769
GD17495 Drosophila simulans FBgn0189047 I 0.769
GJ19245 Drosophila virilis FBgn0206390 I 0.769
GK19810 Drosophila willistoni FBgn0221808 I 0.769
GE17890 Drosophila yakuba FBgn0235328 I 0.769
RunxB Drosophila melanogaster FBgn0259162 I 0.769
KGM_21067 Danaus plexippus KGM_21067 I 0.769
TC006542 Tribolium castaneum TC006542 I 0.769
Afo_R012718 Aptenodytes forsteri Afo_R012718 I 0.769
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.769
Gfo_R000714 Geospiza fortis Gfo_R000714 I 0.769
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.769
runx2.L Xenopus laevis XB-GENE-864817 I 0.769
BGLB004758 Biomphalaria glabrata BGLB004758 I 0.769
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.763
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.763
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.763
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.744
RUNX3 Bos taurus ENSBTAG00000019800 I 0.744
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.744
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.744
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.744
RUNX1 Equus caballus ENSECAG00000003462 I 0.744
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.744
ENSMGAG00000002035 Meleagris gallopavo ENSMGAG00000002035 I 0.744
ENSMGAG00000014534 Meleagris gallopavo ENSMGAG00000014534 I 0.744
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.744
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.744
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.744
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.744
Runx1 Mus musculus ENSMUSG00000022952 D 0.744
ENSOARG00000013599 Ovis aries ENSOARG00000013599 I 0.744
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.744
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.744
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.744
ENSSHAG00000012559 Sarcophilus harrisii ENSSHAG00000012559 I 0.744
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.744
ENSSTOG00000020082 Ictidomys tridecemlineatus ENSSTOG00000020082 I 0.744
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.744
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.744
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.744
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.744
run Drosophila melanogaster FBgn0003300 D 0.744
run Drosophila pseudoobscura FBgn0013862 I 0.744
run Drosophila virilis FBgn0013920 I 0.744
run Drosophila simulans FBgn0016352 I 0.744
run Drosophila yakuba FBgn0084618 I 0.744
run Drosophila erecta FBgn0085118 I 0.744
GF15970 Drosophila ananassae FBgn0092993 I 0.744
GH17740 Drosophila grimshawi FBgn0125210 I 0.744
GI15491 Drosophila mojavensis FBgn0138240 I 0.744
GL15806 Drosophila persimilis FBgn0153410 I 0.744
GM23050 Drosophila sechellia FBgn0177918 I 0.744
GK19815 Drosophila willistoni FBgn0221813 I 0.744
PHUM333310 Pediculus humanus PHUM333310 I 0.744
Aan_R005895 Calypte anna Aan_R005895 I 0.744
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.744
runx2 Xenopus tropicalis XB-GENE-482021 I 0.744
runx1.L Xenopus laevis XB-GENE-864949 I 0.744
XP_002939386 Xenopus tropicalis XP_002939386 I 0.744
XP_002939387 Xenopus tropicalis XP_002939387 I 0.744
ACUA008762 Anopheles culicifacies ACUA008762 I 0.739
ACEP16394 Atta cephalotes ACEP16394 I 0.738
EFV53501 Trichinella spiralis EFV53501 N 0.722
AGAP001094 Anopheles gambiae AGAP001094 I 0.718
AARA011472 Anopheles arabiensis AARA011472 I 0.718
ACOM031089 Anopheles coluzzii ACOM031089 I 0.718
AMEC007551 Anopheles melas AMEC007551 I 0.718
AMEM004753 Anopheles merus AMEM004753 I 0.718
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.718
EmuJ_000490800 Echinococcus multilocularis EmuJ_000490800 I 0.718
LCUP002653 Lucilia cuprina LCUP002653 N 0.707