CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCP1
Arabidopsis thaliana
AT1G67260
D
PK19717.1
Cannabis sativa
PK19717.1
D
PK12240.1
Cannabis sativa
PK12240.1
D
Ciclev10024246m.g
Citrus clementina
Ciclev10024246m.g
I
Eucgr.B00699
Eucalyptus grandis
Eucgr.B00699
I
Carubv10020555m.g
Capsella rubella
Carubv10020555m.g
I
Carubv10020487m.g
Capsella rubella
Carubv10020487m.g
I
Cagra.1157s0001
Capsella grandiflora
Cagra.1157s0001
I
Cagra.1125s0016
Capsella grandiflora
Cagra.1125s0016
I
Bostr.26959s0184
Boechera stricta
Bostr.26959s0184
I
Bostr.26959s0002
Boechera stricta
Bostr.26959s0002
I
Aquca_026_00208
Aquilegia coerulea
Aquca_026_00208
I
Aquca_002_01093
Aquilegia coerulea
Aquca_002_01093
I
mgf026636m
Mimulus guttatus
mgf026636m
I
mgf022233m
Mimulus guttatus
mgf022233m
I
mgf019480m
Mimulus guttatus
mgf019480m
I
Cucsa.283930
Cucumis sativus
Cucsa.283930
I
Cucsa.280880
Cucumis sativus
Cucsa.280880
I
Cucsa.238090
Cucumis sativus
Cucsa.238090
I
Cucsa.031600
Cucumis sativus
Cucsa.031600
I
cassava32886.m1
Manihot esculenta
cassava32886.m1
I
cassava16230.m1
Manihot esculenta
cassava16230.m1
I
cassava10552.m1
Manihot esculenta
cassava10552.m1
I
30167.m000856
Ricinus communis
30167.m000856
I
Lus10035055.g
Linum usitatissimum
Lus10035055.g
I
chr5.CM0357.550.nc
Lotus japonicus
chr5.CM0357.550.nc
I
chr2.LjB17A04.40.nc
Lotus japonicus
chr2.LjB17A04.40.nc
I
chr1.LjB10L14.10.nc
Lotus japonicus
chr1.LjB10L14.10.nc
I
Thhalv10019499m.g
Eutrema salsugineum
Thhalv10019499m.g
I
SapurV1A.0682s0140
Salix purpurea
SapurV1A.0682s0140
I
SapurV1A.0304s0080
Salix purpurea
SapurV1A.0304s0080
I
orange1.1g039323m.g
Citrus sinensis
orange1.1g039323m.g
I
orange1.1g035911m.g
Citrus sinensis
orange1.1g035911m.g
I
MDP0000272980
Malus domestica
MDP0000272980
I
MDP0000173048
Malus domestica
MDP0000173048
I
Ciclev10033382m.g
Citrus clementina
Ciclev10033382m.g
I
Lus10034072.g
Linum usitatissimum
Lus10034072.g
I
Lus10021713.g
Linum usitatissimum
Lus10021713.g
I
Gorai.008G186800
Gossypium raimondii
Gorai.008G186800
I
Gorai.001G200400
Gossypium raimondii
Gorai.001G200400
I
gene03882-v1.0-hybrid
Fragaria vesca
gene03882-v1.0-hybrid
I
evm.TU.supercontig_179.29
Carica papaya
evm.TU.supercontig_179.29
I
evm.TU.supercontig_1401.1
Carica papaya
evm.TU.supercontig_1401.1
I
Eucgr.J01466
Eucalyptus grandis
Eucgr.J01466
I
29738.m001041
Ricinus communis
29738.m001041
I
TCP1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_2001059
I
MTR_6g017055
Medicago truncatula
MTR_6g017055
I
MTR_1g103380
Medicago truncatula
MTR_1g103380
I
GLYMA20G28670
Glycine max
GLYMA20G28670
I
GLYMA19G05921
Glycine max
GLYMA19G05921
I
GLYMA18G51581
Glycine max
GLYMA18G51581
I
GLYMA13G07475
Glycine max
GLYMA13G07475
I
GLYMA10G39141
Glycine max
GLYMA10G39141
I
GLYMA08G28691
Glycine max
GLYMA08G28691
I
GLYMA05G07943
Glycine max
GLYMA05G07943
I
BRC2
Arabidopsis lyrata
fgenesh1_pm.C_scaffold_2000933
I
MTR_7g018500
Medicago truncatula
MTR_7g018500
I
Bra038350
Brassica rapa
Bra038350
I
Bra034010
Brassica rapa
Bra034010
I
Bra004212
Brassica rapa
Bra004212
I
Bra004097
Brassica rapa
Bra004097
I
Bo6g103670
Brassica oleracea
Bo6g103670
I
Bo6g099040
Brassica oleracea
Bo6g099040
I
Bo2g061250
Brassica oleracea
Bo2g061250
I
Bo2g055640
Brassica oleracea
Bo2g055640
I
BRC2
Arabidopsis thaliana
AT1G68800
I
Solyc04g006980.1
Solanum lycopersicum
Solyc04g006980.1
I
Pm015499
Prunus mume
Pm015499
I
Cla016709
Citrullus lanatus
Cla016709
I
Cla007227
Citrullus lanatus
Cla007227
I
Cla002355
Citrullus lanatus
Cla002355
I
TCP1
Vitis vinifera
VIT_14s0083g00150
I
BRC2
Vitis vinifera
VIT_01s0011g02920
I
TCM_019518
Theobroma cacao
TCM_019518
I
TCM_011874
Theobroma cacao
TCM_011874
I
Solyc05g009900.1
Solanum lycopersicum
Solyc05g009900.1
I
Pm029002
Prunus mume
Pm029002
I
Solyc03g119770.2
Solanum lycopersicum
Solyc03g119770.2
I
PRUPE_ppa027156mg
Prunus persica
PRUPE_ppa027156mg
I
PRUPE_ppa016240mg
Prunus persica
PRUPE_ppa016240mg
I
POPTR_0017s13980
Populus trichocarpa
POPTR_0017s13980
I
POPTR_0010s14030
Populus trichocarpa
POPTR_0010s14030
I
POPTR_0008s11470
Populus trichocarpa
POPTR_0008s11470
I
PGSC0003DMG400007467
Solanum tuberosum
PGSC0003DMG400007467
I
PGSC0003DMG400005705
Solanum tuberosum
PGSC0003DMG400005705
I
PGSC0003DMG400003362
Solanum tuberosum
PGSC0003DMG400003362
I
PGSC0003DMG400000823
Solanum tuberosum
PGSC0003DMG400000823
I
BRADI3G36590
Brachypodium distachyon
BRADI3G36590
N