CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_43.109
(
Carica papaya
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
evm.TU.supercontig_43.109
T258250_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_43.109
MADS box
12
62
RETKEQRAVTFSKRRRGLFNKAAELCVLCDFQVAVLVSSPNPAKLNKFYTF
Links
Other
MADS box
family TFs
Other
Carica papaya
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VHR2
Saccharomyces cerevisiae
YER064C
D
VHR1
Saccharomyces cerevisiae
YIL056W
D
10921_YIL056W
Saccharomyces mikatae
10921_YIL056W
I
TDEL_0H01980
Torulaspora delbrueckii
TDEL_0H01980
I
ZBAI_00133
Zygosaccharomyces bailii
ZBAI_00133
I
ZBAI_05302
Zygosaccharomyces bailii
ZBAI_05302
I
ZYRO0C08250g
Zygosaccharomyces rouxii
ZYRO0C08250g
I
Scas_Contig701.7
Saccharomyces castellii
Scas_Contig701.7
I
Scas_Contig704.29
Saccharomyces castellii
Scas_Contig704.29
I
TBLA_0C04650
Tetrapisispora blattae
TBLA_0C04650
I
11035_YIL056W
Saccharomyces paradoxus
11035_YIL056W
I
11559_YIL056W
Saccharomyces bayanus
11559_YIL056W
I
6292_YER064C
Saccharomyces paradoxus
6292_YER064C
I
6651_YER064C
Saccharomyces mikatae
6651_YER064C
I
7027_YER064C
Saccharomyces bayanus
7027_YER064C
I
KLTH0A04444g
Kluyveromyces thermotolerans
KLTH0A04444g
I
Kwal_5842
Kluyveromyces waltii
Kwal_5842
I
SAKL0F08734g
Lachancea kluyveri
SAKL0F08734g
I
KNAG_0L01530
Kazachstania naganishii
KNAG_0L01530
I
AGOS_ADL067C
Ashbya gossypii
AGOS_ADL067C
I
CAGL0J03014g
Candida glabrata
CAGL0J03014g
I
Ecym_4329
Eremothecium cymbalariae
Ecym_4329
I
KAFR_0I01770
Kazachstania africana
KAFR_0I01770
I
KAFR_0L00930
Kazachstania africana
KAFR_0L00930
I
KLLA0_C08151g
Kluyveromyces lactis
KLLA0_C08151g
I
KLTH0A04444g
Lachancea thermotolerans
KLTH0A04444g
I
AACERI_AaceriADL067C
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriADL067C
I
Kpol_1066p52
Vanderwaltozyma polyspora
Kpol_1066p52
I
LALA0_S01e02388g
Lachancea lanzarotensis
LALA0_S01e02388g
I
NCAS_0A13540
Naumovozyma castellii
NCAS_0A13540
I
NCAS_0E03320
Naumovozyma castellii
NCAS_0E03320
I
NDAI_0A02490
Naumovozyma dairenensis
NDAI_0A02490
I
NDAI_0E04810
Naumovozyma dairenensis
NDAI_0E04810
I
SKUD_176205
Saccharomyces kudriavzevii
SKUD_176205
I
SU7_1620
Saccharomyces arboricola
SU7_1620
I
KAFR_0I01790
Kazachstania africana
KAFR_0I01790
N