gene18029-v1.0-hybrid (Fragaria vesca)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 gene18029-v1.0-hybrid T258341_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.812 0.812
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18029.1-v1.0-hybrid MADS box 10 58

Links

Other MADS box family TFs
Other Fragaria vesca TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSXMAG00000004566 Xiphophorus maculatus ENSXMAG00000004566 I 0.000
ENSPFOG00000004367 Poecilia formosa ENSPFOG00000004367 I 0.000
mxd1 Oryzias latipes ENSORLG00000015461 I 0.000
ENSONIG00000015871 Oreochromis niloticus ENSONIG00000015871 I 0.000
mxd1 Tetraodon nigroviridis ENSTNIG00000000414 I 0.000
ENSLOCG00000015320 Lepisosteus oculatus ENSLOCG00000015320 I 0.000
mxd1 Gasterosteus aculeatus ENSGACG00000013215 I 0.000
mxd4 Tetraodon nigroviridis ENSTNIG00000018042 N 0.000
MXD4 Anolis carolinensis ENSACAG00000007819 N 0.000
mxd1 Xenopus tropicalis XB-GENE-943715 N 0.000
ENSPFOG00000011915 Poecilia formosa ENSPFOG00000011915 N 0.000
ENSPPYG00000014540 Pongo abelii ENSPPYG00000014540 N 0.000
mxd4 Xenopus tropicalis XB-GENE-6257573 N 0.000
ENSPSIG00000016320 Pelodiscus sinensis ENSPSIG00000016320 N 0.000
MXD4 Pan troglodytes ENSPTRG00000015844 N 0.000
MXD4 Pteropus vampyrus ENSPVAG00000011169 N 0.000
Mxd4 Rattus norvegicus ENSRNOG00000015033 N 0.000
ENSSHAG00000011878 Sarcophilus harrisii ENSSHAG00000011878 N 0.000
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N 0.000
MXD4 Taeniopygia guttata ENSTGUG00000010530 N 0.000
mxd4.S Xenopus laevis XB-GENE-6256011 N 0.000
mxd4.L Xenopus laevis XB-GENE-6252709 N 0.000
Pvit_14853 Pogona vitticeps Pvit_14853 N 0.000
mxd4 Takifugu rubripes ENSTRUG00000003046 N 0.000
mxd1 Takifugu rubripes ENSTRUG00000014843 N 0.000
MXD4 Tursiops truncatus ENSTTRG00000013740 N 0.000
mxd1.L Xenopus laevis XB-GENE-943720 N 0.000
ENSXMAG00000005473 Xiphophorus maculatus ENSXMAG00000005473 N 0.000
Tal_R007717 Tyto alba Tal_R007717 N 0.000
Aan_R001830 Calypte anna Aan_R001830 N 0.000
Afo_R015384 Aptenodytes forsteri Afo_R015384 N 0.000
Alligator_sinensis_CCG000560.1 Alligator sinensis Alligator_sinensis_CCG000560.1 N 0.000
Brh_R000219 Buceros rhinoceros Brh_R000219 N 0.000
ENSP00000337889 Macaca fascicularis ENSP00000337889 N 0.000
Gfo_R003202 Geospiza fortis Gfo_R003202 N 0.000
Myotis_brandtii_MXD4_10021599 Myotis brandtii Myotis_brandtii_MXD4_10021599 N 0.000
Ogr18275 Ophisaurus gracilis Ogr18275 N 0.000
mxd1 Danio rerio ENSDARG00000032039 N 0.000
mxd4 Gasterosteus aculeatus ENSGACG00000017587 N 0.000
MXD4 Homo sapiens ENSG00000123933 N 0.000
MXD4 Felis catus ENSFCAG00000012927 N 0.000
ENSFALG00000009868 Ficedula albicollis ENSFALG00000009868 N 0.000
MXD4 Echinops telfairi ENSETEG00000005547 N 0.000
MXD4 Equus caballus ENSECAG00000002580 N 0.000
MXD4 Dasypus novemcinctus ENSDNOG00000047281 N 0.000
mxd4 Danio rerio ENSDARG00000054031 N 0.000
MXD4 Gallus gallus ENSGALG00000015688 N 0.000
ENSCSAG00000015741 Chlorocebus sabaeus ENSCSAG00000015741 N 0.000
MXD4 Cavia porcellus ENSCPOG00000022492 N 0.000
MXD4 Callithrix jacchus ENSCJAG00000014432 N 0.000
MXD4 Canis familiaris ENSCAFG00000014873 N 0.000
MXD4 Bos taurus ENSBTAG00000015209 N 0.000
ENSAPLG00000004997 Anas platyrhynchos ENSAPLG00000004997 N 0.000
ENSAMEG00000014340 Ailuropoda melanoleuca ENSAMEG00000014340 N 0.000
MXD4 Procavia capensis ENSPCAG00000014133 N 0.000
MXD4 Gorilla gorilla ENSGGOG00000000747 N 0.000
ENSLACG00000006663 Latimeria chalumnae ENSLACG00000006663 N 0.000
MXD4 Loxodonta africana ENSLAFG00000026709 N 0.000
ENSLOCG00000002303 Lepisosteus oculatus ENSLOCG00000002303 N 0.000
ENSMEUG00000013427 Macropus eugenii ENSMEUG00000013427 N 0.000
MXD4 Meleagris gallopavo ENSMGAG00000013027 N 0.000
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N 0.000
MXD4 Monodelphis domestica ENSMODG00000004033 N 0.000
ENSMPUG00000010989 Mustela putorius furo ENSMPUG00000010989 N 0.000
Mxd4 Mus musculus ENSMUSG00000037235 N 0.000
MXD4 Oryctolagus cuniculus ENSOCUG00000005063 N 0.000
MXD4 Otolemur garnettii ENSOGAG00000011305 N 0.000
ENSONIG00000017548 Oreochromis niloticus ENSONIG00000017548 N 0.000
mxd4 Oryzias latipes ENSORLG00000006439 N 0.000
ENSPANG00000024535 Papio anubis ENSPANG00000024535 N 0.000