Thhalv10002349m.g (Eutrema salsugineum)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Thhalv10002349m.g T259096_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL80
M06994_2.00 		Arabidopsis thaliana
TCACCA
TGGTGA		 Dap-seq
OMalley et al.(2016)
FEM111_col_a 		0.702 0.702
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002349m MADS box 10 57

Links

Other MADS box family TFs
Other Eutrema salsugineum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA20 Arabidopsis thaliana AT2G18380 D 0.000
GATA19 Arabidopsis thaliana AT4G36620 D 0.000
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.000
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.000
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.000
GATA18 Arabidopsis thaliana AT3G50870 I 0.000
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.000
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.000
GATA15 Oryza indica BGIOSGA020424 I 0.000
Bo1g005530 Brassica oleracea Bo1g005530 I 0.000
Bo7g010220 Brassica oleracea Bo7g010220 I 0.000
Bo7g064860 Brassica oleracea Bo7g064860 I 0.000
Bo7g100580 Brassica oleracea Bo7g100580 I 0.000
Bo7g118030 Brassica oleracea Bo7g118030 I 0.000
Bo8g080330 Brassica oleracea Bo8g080330 I 0.000
Bo9g026020 Brassica oleracea Bo9g026020 I 0.000
Bra010563 Brassica rapa Bra010563 I 0.000
Bra011695 Brassica rapa Bra011695 I 0.000
Bra012080 Brassica rapa Bra012080 I 0.000
Bra012883 Brassica rapa Bra012883 I 0.000
Bra017766 Brassica rapa Bra017766 I 0.000
Bra036854 Brassica rapa Bra036854 I 0.000
Bra037221 Brassica rapa Bra037221 I 0.000
Bra039614 Brassica rapa Bra039614 I 0.000
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.000
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.000
F775_00859 Aegilops tauschii F775_00859 I 0.000
F775_42893 Aegilops tauschii F775_42893 I 0.000
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.000
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.000
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.000
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.000
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.000
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.000
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.000
GSMUA_Achr11G17770_001 Musa acuminata GSMUA_Achr11G17770_001 I 0.000
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.000
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.000
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.000
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.000
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.000
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.000
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.000
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.000
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.000
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.000
OB01G34710 Oryza brachyantha OB01G34710 I 0.000
OB05G34480 Oryza brachyantha OB05G34480 I 0.000
OBART01G25510 Oryza barthii OBART01G25510 I 0.000
OBART05G26150 Oryza barthii OBART05G26150 I 0.000
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.000
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.000
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.000
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.000
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.000
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.000
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.000
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.000
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.000
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.000
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.000
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.000
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.000
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.000
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.000
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.000
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.000
OS01G0662800 Oryza sativa OS01G0662800 I 0.000
OS05G0567900 Oryza sativa OS05G0567900 I 0.000
GATA15 Oryza sativa OS05G0578900 I 0.000
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.000
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.000
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.000
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.000
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.000
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.000
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.000
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.000
Si022366m.g Setaria italica Si022366m.g I 0.000
Si024214m.g Setaria italica Si024214m.g I 0.000
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.000
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.000
TCM_000376 Theobroma cacao TCM_000376 I 0.000
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.000
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.000
MNP Vitis vinifera VIT_04s0023g01840 I 0.000
Ca_02038 Cicer arietinum Ca_02038 I 0.000
Ca_16057 Cicer arietinum Ca_16057 I 0.000
Cla014435 Citrullus lanatus Cla014435 I 0.000
Cla014810 Citrullus lanatus Cla014810 I 0.000
Pm026628 Prunus mume Pm026628 I 0.000
29634.m002146 Ricinus communis 29634.m002146 I 0.000
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.000
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.000
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.000
mgf023982m Mimulus guttatus mgf023982m I 0.000
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.000
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.000
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.000
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.000
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.000
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.000
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.000
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.000
Carubv10017765m.g Capsella rubella Carubv10017765m.g I 0.000
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.000
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.000
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.000
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.000
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.000
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.000
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.000
MDP0000253174 Malus domestica MDP0000253174 I 0.000
MDP0000310271 Malus domestica MDP0000310271 I 0.000
Pavir.Ca00998 Panicum virgatum Pavir.Ca00998 I 0.000
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.000
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.000
Pavir.J03293 Panicum virgatum Pavir.J03293 I 0.000
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.000
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.000
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.000
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.000
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.000
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.000
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.000
PK24471.1 Cannabis sativa PK24471.1 I 0.000
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.000
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.000
GRMZM2G138967 Zea mays GRMZM2G138967 N 0.000