Pavir.Ca00998 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.Ca00998 T196729_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.862 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.862 0.944
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.820 0.889
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.820 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca00998.1.p GATA 148 183

Links

Other GATA family TFs
Other Panicum virgatum TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI2G14890 Brachypodium distachyon BRADI2G14890 I 0.867
Sb09g029510 Sorghum bicolor Sb09g029510 I 0.867
Si022366m.g Setaria italica Si022366m.g I 0.867
Pavir.J18346 Panicum virgatum Pavir.J18346 I 0.867
MNP Arabidopsis lyrata Al_scaffold_0005_1952 I 0.862
GATA18 Arabidopsis thaliana AT3G50870 I 0.862
GATA19 Arabidopsis thaliana AT4G36620 D 0.862
Bo7g064860 Brassica oleracea Bo7g064860 I 0.862
Bo7g100580 Brassica oleracea Bo7g100580 I 0.862
Bo7g118030 Brassica oleracea Bo7g118030 I 0.862
Bo8g080330 Brassica oleracea Bo8g080330 I 0.862
Bra012883 Brassica rapa Bra012883 I 0.862
Bra017766 Brassica rapa Bra017766 I 0.862
Bra036854 Brassica rapa Bra036854 I 0.862
F775_42893 Aegilops tauschii F775_42893 I 0.862
GATA19 Arabidopsis lyrata fgenesh2_kg.7__409__AT4G36620.1 I 0.862
GLYMA11G07350 Glycine max GLYMA11G07350 I 0.862
GLYMA16G25370 Glycine max GLYMA16G25370 I 0.862
MLOC_62522 Hordeum vulgare MLOC_62522 I 0.862
MTR_5g020230 Medicago truncatula MTR_5g020230 I 0.862
PGSC0003DMG400003508 Solanum tuberosum PGSC0003DMG400003508 I 0.862
PGSC0003DMG400015502 Solanum tuberosum PGSC0003DMG400015502 I 0.862
POPTR_0005s12440 Populus trichocarpa POPTR_0005s12440 I 0.862
POPTR_0007s12930 Populus trichocarpa POPTR_0007s12930 I 0.862
PRUPE_ppa014930mg Prunus persica PRUPE_ppa014930mg I 0.862
Solyc02g062760.2 Solanum lycopersicum Solyc02g062760.2 I 0.862
Solyc02g085190.1 Solanum lycopersicum Solyc02g085190.1 I 0.862
TCM_000376 Theobroma cacao TCM_000376 I 0.862
Traes_1AL_A1EA76E83 Triticum aestivum Traes_1AL_A1EA76E83 I 0.862
MNP Vitis vinifera VIT_04s0023g01840 I 0.862
Ca_02038 Cicer arietinum Ca_02038 I 0.862
Cla014810 Citrullus lanatus Cla014810 I 0.862
Pm026628 Prunus mume Pm026628 I 0.862
29634.m002146 Ricinus communis 29634.m002146 I 0.862
cassava21185.m1 Manihot esculenta cassava21185.m1 I 0.862
cassava5664.m1 Manihot esculenta cassava5664.m1 I 0.862
Cucsa.106490 Cucumis sativus Cucsa.106490 I 0.862
mgf023982m Mimulus guttatus mgf023982m I 0.862
Bostr.6864s0159 Boechera stricta Bostr.6864s0159 I 0.862
Bostr.7867s1518 Boechera stricta Bostr.7867s1518 I 0.862
Cagra.0926s0051 Capsella grandiflora Cagra.0926s0051 I 0.862
Carubv10007612m.g Capsella rubella Carubv10007612m.g I 0.862
Carubv10017765m.g Capsella rubella Carubv10017765m.g I 0.862
Ciclev10026328m.g Citrus clementina Ciclev10026328m.g I 0.862
evm.TU.supercontig_6.118 Carica papaya evm.TU.supercontig_6.118 I 0.862
gene14763-v1.0-hybrid Fragaria vesca gene14763-v1.0-hybrid I 0.862
Gorai.003G014300 Gossypium raimondii Gorai.003G014300 I 0.862
Gorai.007G202900 Gossypium raimondii Gorai.007G202900 I 0.862
Gorai.008G067800 Gossypium raimondii Gorai.008G067800 I 0.862
Lus10028301.g Linum usitatissimum Lus10028301.g I 0.862
MDP0000253174 Malus domestica MDP0000253174 I 0.862
MDP0000310271 Malus domestica MDP0000310271 I 0.862
Pavir.Eb02678 Panicum virgatum Pavir.Eb02678 I 0.862
SapurV1A.0254s0200 Salix purpurea SapurV1A.0254s0200 I 0.862
SapurV1A.0978s0140 Salix purpurea SapurV1A.0978s0140 I 0.862
Thhalv10010986m.g Eutrema salsugineum Thhalv10010986m.g I 0.862
Thhalv10027520m.g Eutrema salsugineum Thhalv10027520m.g I 0.862
PK24471.1 Cannabis sativa PK24471.1 I 0.862
chr2.CM0249.1330.nc Lotus japonicus chr2.CM0249.1330.nc I 0.862
chr4.CM0283.270.nd Lotus japonicus chr4.CM0283.270.nd I 0.862
GLYMA02G06320 Glycine max GLYMA02G06320 I 0.861
Bra010563 Brassica rapa Bra010563 I 0.857
Pavir.Ea02338 Panicum virgatum Pavir.Ea02338 I 0.857
Bo1g005530 Brassica oleracea Bo1g005530 I 0.851
Bra011695 Brassica rapa Bra011695 I 0.851
GLYMA11G25375 Glycine max GLYMA11G25375 I 0.851
AMTR_s00011p00253850 Amborella trichopoda AMTR_s00011p00253850 I 0.848
BGIOSGA001076 Oryza indica BGIOSGA001076 I 0.848
BGIOSGA017544 Oryza indica BGIOSGA017544 I 0.848
GATA15 Oryza indica BGIOSGA020424 I 0.848
BRADI2G45750 Brachypodium distachyon BRADI2G45750 I 0.848
F775_00859 Aegilops tauschii F775_00859 I 0.848
GRMZM2G123909 Zea mays GRMZM2G123909 I 0.848
GSMUA_Achr3G31070_001 Musa acuminata GSMUA_Achr3G31070_001 I 0.848
GSMUA_Achr6G27250_001 Musa acuminata GSMUA_Achr6G27250_001 I 0.848
GSMUA_Achr7G25620_001 Musa acuminata GSMUA_Achr7G25620_001 I 0.848
LPERR01G21790 Leersia perrieri LPERR01G21790 I 0.848
LPERR05G21780 Leersia perrieri LPERR05G21780 I 0.848
LPERR05G22620 Leersia perrieri LPERR05G22620 I 0.848
MLOC_5372 Hordeum vulgare MLOC_5372 I 0.848
OB01G34710 Oryza brachyantha OB01G34710 I 0.848
OB05G34480 Oryza brachyantha OB05G34480 I 0.848
OBART01G25510 Oryza barthii OBART01G25510 I 0.848
OGLUM01G29320 Oryza glumaepatula OGLUM01G29320 I 0.848
OGLUM05G28510 Oryza glumaepatula OGLUM05G28510 I 0.848
OMERI01G23200 Oryza meridionalis OMERI01G23200 I 0.848
OMERI03G30220 Oryza meridionalis OMERI03G30220 I 0.848
OMERI05G23010 Oryza meridionalis OMERI05G23010 I 0.848
ONIVA01G28750 Oryza nivara ONIVA01G28750 I 0.848
ONIVA05G29020 Oryza nivara ONIVA05G29020 I 0.848
OPUNC01G25380 Oryza punctata OPUNC01G25380 I 0.848
OPUNC05G23750 Oryza punctata OPUNC05G23750 I 0.848
OPUNC05G24550 Oryza punctata OPUNC05G24550 I 0.848
ORGLA01G0208300 Oryza glaberrima ORGLA01G0208300 I 0.848
ORGLA05G0226400 Oryza glaberrima ORGLA05G0226400 I 0.848
ORGLA05G0233700 Oryza glaberrima ORGLA05G0233700 I 0.848
ORUFI01G28370 Oryza rufipogon ORUFI01G28370 I 0.848
ORUFI05G28050 Oryza rufipogon ORUFI05G28050 I 0.848
ORUFI05G28920 Oryza rufipogon ORUFI05G28920 I 0.848
OS01G0662800 Oryza sativa OS01G0662800 I 0.848
OS05G0567900 Oryza sativa OS05G0567900 I 0.848
GATA15 Oryza sativa OS05G0578900 I 0.848
Sb03g030310 Sorghum bicolor Sb03g030310 I 0.848
Sb09g028850 Sorghum bicolor Sb09g028850 I 0.848
Si024214m.g Setaria italica Si024214m.g I 0.848
TRAES3BF091700010CFD_g Triticum aestivum TRAES3BF091700010CFD_g I 0.848
Ca_16057 Cicer arietinum Ca_16057 I 0.848
Aquca_007_00224 Aquilegia coerulea Aquca_007_00224 I 0.848
Aquca_010_00506 Aquilegia coerulea Aquca_010_00506 I 0.848
Pavir.J03293 Panicum virgatum Pavir.J03293 I 0.848
Pavir.J26908 Panicum virgatum Pavir.J26908 I 0.848
Cla014435 Citrullus lanatus Cla014435 I 0.838
Cucsa.127470 Cucumis sativus Cucsa.127470 I 0.838
Bra012080 Brassica rapa Bra012080 I 0.831
GRMZM2G325850 Zea mays GRMZM2G325850 I 0.829
Bo9g026020 Brassica oleracea Bo9g026020 I 0.825
GATA20 Arabidopsis lyrata Al_scaffold_0003_3815 I 0.820
GATA20 Arabidopsis thaliana AT2G18380 D 0.820
Bo7g010220 Brassica oleracea Bo7g010220 I 0.820
Bra037221 Brassica rapa Bra037221 I 0.820
Bra039614 Brassica rapa Bra039614 I 0.820
Bostr.18351s0307 Boechera stricta Bostr.18351s0307 I 0.820
Carubv10014541m.g Capsella rubella Carubv10014541m.g I 0.820
Thhalv10022854m.g Eutrema salsugineum Thhalv10022854m.g I 0.820
MTR_8g077510 Medicago truncatula MTR_8g077510 I 0.813
OBART05G26150 Oryza barthii OBART05G26150 I 0.813
OGLUM05G27770 Oryza glumaepatula OGLUM05G27770 I 0.813
Bo3g019610 Brassica oleracea Bo3g019610 I 0.807
Bra006851 Brassica rapa Bra006851 I 0.807
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I 0.807
GRMZM2G397616 Zea mays GRMZM2G397616 I 0.805