Bo8g105490 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo8g105490 T267585_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.866 0.946
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.866 0.946
AtMYB10
M07081_2.00 		Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR		 Dap-seq
OMalley et al.(2016)
MYB10_col_a 		0.752 0.796
AtMYB10
M07082_2.00 		Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB10_colamp_a 		0.752 0.796
MYB15
M07084_2.00 		Arabidopsis thaliana
NNNHNNHHNHHYCACCWAMYH
DRKTWGGTGRDDNDDNNDNNN		 Dap-seq
OMalley et al.(2016)
ATY19_col_a 		0.714 0.774
MYB15
M02699_2.00 		Arabidopsis thaliana
CCACCTACCSBBG
CVVSGGTAGGTGG		 SELEX
Mathelier et al.(2014)
MA0574.1 		0.714 0.774
MYB15
M11041_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_01 		0.714 0.774
MYB15
M11042_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB15_Q2 		0.714 0.774
ATMYB13
M06999_2.00 		Arabidopsis thaliana
HYCACCWACCHHHNH
DNDDDGGTWGGTGRD		 Dap-seq
OMalley et al.(2016)
MYB13_col_a 		0.712 0.763
ATMYB13
M07000_2.00 		Arabidopsis thaliana
BYCACCWACCHHHNNHNN
NNDNNDDDGGTWGGTGRV		 Dap-seq
OMalley et al.(2016)
MYB13_colamp_a 		0.712 0.763
MYB107
M07061_2.00 		Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN		 Dap-seq
OMalley et al.(2016)
MYB107_col_a 		0.686 0.720
MYB107
M07062_2.00 		Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW		 Dap-seq
OMalley et al.(2016)
MYB107_colamp_a 		0.686 0.720
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.670 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo8g105490.1 Myb 16 63
Bo8g105490.1 Myb 69 114

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

554 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
STOP1 Arabidopsis thaliana AT1G34370 D
TRIUR3_13796 Triticum urartu TRIUR3_13796 I
PK23301.1 Cannabis sativa PK23301.1 I
STOP1 Vitis vinifera VIT_18s0072g00840 I
Ca_04300 Cicer arietinum Ca_04300 I
Cla016623 Citrullus lanatus Cla016623 I
Pm022201 Prunus mume Pm022201 I
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I
Cucsa.079940 Cucumis sativus Cucsa.079940 I
mgf000060m Mimulus guttatus mgf000060m I
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I
Carubv10008876m.g Capsella rubella Carubv10008876m.g I
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I
MDP0000141403 Malus domestica MDP0000141403 I
MDP0000199559 Malus domestica MDP0000199559 I
MDP0000453148 Malus domestica MDP0000453148 I
MDP0000551046 Malus domestica MDP0000551046 I
MDP0000807856 Malus domestica MDP0000807856 I
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I
Pavir.J06328 Panicum virgatum Pavir.J06328 I
Pavir.J12018 Panicum virgatum Pavir.J12018 I
Pavir.J14096 Panicum virgatum Pavir.J14096 I
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I
OLONG_020555 Oryza longistaminata OLONG_020555 I
BGIOSGA004888 Oryza indica BGIOSGA004888 I
Bo8g027000 Brassica oleracea Bo8g027000 I
Bra040971 Brassica rapa Bra040971 I
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I
F775_04088 Aegilops tauschii F775_04088 I
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I
GRMZM2G075956 Zea mays GRMZM2G075956 I
GRMZM2G129428 Zea mays GRMZM2G129428 I
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I
LPERR01G33350 Leersia perrieri LPERR01G33350 I
MLOC_10987 Hordeum vulgare MLOC_10987 I
OB01G47470 Oryza brachyantha OB01G47470 I
OBART01G38810 Oryza barthii OBART01G38810 I
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I
ONIVA01G43630 Oryza nivara ONIVA01G43630 I
OPUNC01G37530 Oryza punctata OPUNC01G37530 I
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I
OS01G0871200 Oryza sativa OS01G0871200 I
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I
Sb03g041170 Sorghum bicolor Sb03g041170 I
Si001053m.g Setaria italica Si001053m.g I
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I
TCM_036719 Theobroma cacao TCM_036719 I
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I