Bo9g183320 (Brassica oleracea)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bo9g183320 T267662_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.909 1.000
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.909 1.000
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.909 0.978
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.909 0.978
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.909 0.978
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.891 0.935
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.891 0.935
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.891 0.935
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.795 0.870
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.795 0.870
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.795 0.870
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g183320.1 Myb 47 92

Links

Other Myb/SANT family TFs
Other Brassica oleracea TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G22990 Arabidopsis thaliana AT5G22990 D
AT2G15740 Arabidopsis thaliana AT2G15740 D
Cagra.2968s0004 Capsella grandiflora Cagra.2968s0004 I
Thhalv10023174m.g Eutrema salsugineum Thhalv10023174m.g I
Thhalv10015522m.g Eutrema salsugineum Thhalv10015522m.g I
Carubv10027554m.g Capsella rubella Carubv10027554m.g I
Carubv10025077m.g Capsella rubella Carubv10025077m.g I
Carubv10016477m.g Capsella rubella Carubv10016477m.g I
Carubv10015875m.g Capsella rubella Carubv10015875m.g I
Carubv10015674m.g Capsella rubella Carubv10015674m.g I
Carubv10002800m.g Capsella rubella Carubv10002800m.g I
Cagra.6034s0007 Capsella grandiflora Cagra.6034s0007 I
Cagra.3954s0034 Capsella grandiflora Cagra.3954s0034 I
Cagra.0604s0001 Capsella grandiflora Cagra.0604s0001 I
Bostr.18351s0050 Boechera stricta Bostr.18351s0050 I
Bostr.10199s0147 Boechera stricta Bostr.10199s0147 I
scaffold_303767.1 Arabidopsis lyrata scaffold_303767.1 I
Bra039606 Brassica rapa Bra039606 I
Bo9g147060 Brassica oleracea Bo9g147060 I
Bo7g010020 Brassica oleracea Bo7g010020 I
AT5G42640 Arabidopsis thaliana AT5G42640 I
AT2G18490 Arabidopsis thaliana AT2G18490 I