CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra003443 *(Brassica rapa)* Myb/SANT
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00249 (Myb_DNA-binding)	IPR014778	Bra003443	T267721_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AtMYB17 M07099_2.00	Arabidopsis thaliana	YYYACCWACCWHHHH	DDDDWGGTWGGTRRR	Dap-seq OMalley et al.(2016) MYB17_colamp_a	0.804	0.892
MYB92 M07123_2.00	Arabidopsis thaliana	NHHACCTAMY	RKTAGGTDDN	Dap-seq OMalley et al.(2016) MYB92_100ng20cy_b	0.715	0.710
MYB92 M07124_2.00	Arabidopsis thaliana	NNNNWNNYYYACCWAMYHH	DDRKTWGGTRRRNNWNNNN	Dap-seq OMalley et al.(2016) MYB92_colamp_a	0.715	0.710
MYB106 M11040_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$AT3G01140_01	0.702	0.753
AtMYB93 M07020_2.00	Arabidopsis thaliana	HDNYYYAMCWAMYHHHHHHHH	DDDDDDDDRKTWGKTRRRNHD	Dap-seq OMalley et al.(2016) MYB93_col_a	0.686	0.699
AtMYB93 M07021_2.00	Arabidopsis thaliana	NNHNBYYYAMCWAMY	RKTWGKTRRRVNDNN	Dap-seq OMalley et al.(2016) MYB93_colamp_a	0.686	0.699
Q2TCH0_PETHY M11072_2.00	Petunia x hybrida	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PH4_01	0.673	0.710
MYB107 M07061_2.00	Arabidopsis thaliana	NDDWDBBYYACCWAMYHH	DDRKTWGGTRRVVHWHHN	Dap-seq OMalley et al.(2016) MYB107_col_a	0.664	0.688
MYB107 M07062_2.00	Arabidopsis thaliana	WNBYYYACCWAMYH	DRKTWGGTRRRVNW	Dap-seq OMalley et al.(2016) MYB107_colamp_a	0.664	0.688
For this family, TFs with SR scores > 0.661* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra003443.1-P	Myb	14	61	KGPWTPEEDEILVEYIKQNSHGSWRLLPKKAGLLRCGKSCRLRWTNYL
Bra003443.1-P	Myb	67	112	RGPFTPQEEKLVVQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHL

Links
Other Myb/SANT family TFs
Other *Brassica rapa* TFs

622 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACYPI004878	Acyrthosiphon pisum	ACYPI004878	N
GB44350	Apis mellifera	GB44350	N
NV16614	Nasonia vitripennis	NV16614	N
Cflo_11496--XP_624963.1_APIME	Camponotus floridanus	Cflo_11496--XP_624963.1_APIME	N
CLEC005700	Cimex lectularius	CLEC005700	N