Bra036035 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra036035 T268108_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.664 0.638
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.664 0.638
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.664 0.638
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.664 0.638
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra036035.1-P Myb 5 57

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.000
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.000
POPTR_0005s10050 Populus trichocarpa POPTR_0005s10050 I 0.000
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.000
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.000
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.000
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.000
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.000
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.000
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.000
TCM_043081 Theobroma cacao TCM_043081 I 0.000
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.000
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.000
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.000
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.000
Ca_04287 Cicer arietinum Ca_04287 I 0.000
Cla000556 Citrullus lanatus Cla000556 I 0.000
Pm000938 Prunus mume Pm000938 I 0.000
Pm018585 Prunus mume Pm018585 I 0.000
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.000
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.000
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.000
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.000
Ciclev10032772m.g Citrus clementina Ciclev10032772m.g I 0.000
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.000
OS05G0123000 Oryza sativa OS05G0123000 I 0.000
LjSGA_079580.1.1 Lotus japonicus LjSGA_079580.1.1 I 0.000
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.000
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.000
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.000
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.000
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.000
PDK_20s1376911g004 Phoenix dactylifera PDK_20s1376911g004 I 0.000
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.000
BGIOSGA018905 Oryza indica BGIOSGA018905 I 0.000
OB05G11740 Oryza brachyantha OB05G11740 I 0.000
orange1.1g045080m.g Citrus sinensis orange1.1g045080m.g I 0.000
MDP0000822986 Malus domestica MDP0000822986 I 0.000
MDP0000151784 Malus domestica MDP0000151784 I 0.000
MDP0000123013 Malus domestica MDP0000123013 I 0.000
ONIVA05G01850 Oryza nivara ONIVA05G01850 I 0.000
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.000
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.000
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.000
ORUFI05G01750 Oryza rufipogon ORUFI05G01750 I 0.000
Gorai.011G290800 Gossypium raimondii Gorai.011G290800 I 0.000
PDK_20s1595351g001 Phoenix dactylifera PDK_20s1595351g001 N 0.000
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.000
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.000
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.000
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.000
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.000
MDP0000879799 Malus domestica MDP0000879799 N 0.000
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.000
ONIVA03G14510 Oryza nivara ONIVA03G14510 N 0.000
BGIOSGA010952 Oryza indica BGIOSGA010952 N 0.000
BGIOSGA038947 Oryza indica BGIOSGA038947 N 0.000
BRADI2G37960 Brachypodium distachyon BRADI2G37960 N 0.000
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.000
GRMZM2G145568 Zea mays GRMZM2G145568 N 0.000
LPERR05G01520 Leersia perrieri LPERR05G01520 N 0.000
OB03G23270 Oryza brachyantha OB03G23270 N 0.000
OBART03G13260 Oryza barthii OBART03G13260 N 0.000
OGLUM03G13350 Oryza glumaepatula OGLUM03G13350 N 0.000
OMERI03G12370 Oryza meridionalis OMERI03G12370 N 0.000
OMERI05G01730 Oryza meridionalis OMERI05G01730 N 0.000
Aquca_027_00112 Aquilegia coerulea Aquca_027_00112 N 0.000
OPUNC03G12790 Oryza punctata OPUNC03G12790 N 0.000
ORGLA03G0128100 Oryza glaberrima ORGLA03G0128100 N 0.000
ORUFI03G13900 Oryza rufipogon ORUFI03G13900 N 0.000
OS03G0287400 Oryza sativa OS03G0287400 N 0.000
PGSC0003DMG400025384 Solanum tuberosum PGSC0003DMG400025384 N 0.000
Si024430m.g Setaria italica Si024430m.g N 0.000
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.000
Ca_02507 Cicer arietinum Ca_02507 N 0.000
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.000
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.000
mgf015666m Mimulus guttatus mgf015666m N 0.000