Bra037837 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra037837 T268128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.860 0.957
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.860 0.957
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.860 0.957
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.860 0.957
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.706 0.870
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.702 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra037837.1-P Myb 5 56

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0001052400 Parastrongyloides trichosuri PTRK_0001052400 N
L889_g15246 Steinernema feltiae L889_g15246 N
L893_g5132 Steinernema glaseri L893_g5132 N
L898_g4344 Steinernema monticolum L898_g4344 N
MhA1_Contig659.frz3.gene12 Meloidogyne hapla MhA1_Contig659.frz3.gene12 N
nAv.1.0.1.g02876 Acanthocheilonema viteae nAv.1.0.1.g02876 N
nDi.2.2.2.g08539 Dirofilaria immitis nDi.2.2.2.g08539 N
NECAME_05919 Necator americanus NECAME_05919 N
nLs.2.1.2.g02844 Litomosoides sigmodontis nLs.2.1.2.g02844 N
L596_g21063 Steinernema carpocapsae L596_g21063 N
RSKR_0000114000 Rhabditophanes kr3021 RSKR_0000114000 N
SPAL_0000096300 Strongyloides papillosus SPAL_0000096300 N
SVE_0382900 Strongyloides venezuelensis SVE_0382900 N
TCLT_0000822701 Thelazia callipaeda TCLT_0000822701 N
TCNE_0001786701 Toxocara canis TCNE_0001786701 N
TELCIR_17986 Teladorsagia circumcincta TELCIR_17986 N
TELCIR_20778 Teladorsagia circumcincta TELCIR_20778 N
WUBG_00492 Wuchereria bancrofti WUBG_00492 N
HPLM_0000720101 Haemonchus placei HPLM_0000720101 N
HCOI01584000 Haemonchus contortus HCOI01584000 N
EVEC_0000982901 Enterobius vermicularis EVEC_0000982901 N
DICVIV_00304 Dictyocaulus viviparus DICVIV_00304 N
ASIM_0001677501 Anisakis simplex ASIM_0001677501 N
ANCDUO_19967 Ancylostoma duodenale ANCDUO_19967 N
Minc00757 Meloidogyne incognita Minc00757 N
tag-68 Caenorhabditis elegans WBGene00006445 N
LOAG_18157 Loa loa LOAG_18157 N
CRE29609 Caenorhabditis remanei CRE29609 N
CJA12147 Caenorhabditis japonica CJA12147 N
CBN06012 Caenorhabditis brenneri CBN06012 N
CBN00758 Caenorhabditis brenneri CBN00758 N
CBG02231 Caenorhabditis briggsae CBG02231 N
Bm3899 Brugia malayi Bm3899 N