fgenesh2_kg.1__2004__AT1G18330.2 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh2_kg.1__2004__AT1G18330.2 T270728_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.909 1.000
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.909 1.000
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.909 1.000
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.909 1.000
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.909 1.000
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.800 0.783
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.800 0.783
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.794 0.848
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.790 0.783
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.744 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.744 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.703 0.739
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.703 0.739
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.703 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__2004__AT1G18330.2 Myb 50 95

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

274 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HES2 Homo sapiens ENSG00000069812 D
ENSCSAG00000000740 Chlorocebus sabaeus ENSCSAG00000000740 I
ENSBTAP00000028261-D1 Bos grunniens ENSBTAP00000028261-D1 I
ENSTBEG00000011892 Tupaia belangeri ENSTBEG00000011892 I
ENSSTOG00000013642 Ictidomys tridecemlineatus ENSSTOG00000013642 I
ENSPPYG00000001944 Pongo abelii ENSPPYG00000001944 I
HES2 Procavia capensis ENSPCAG00000007135 I
ENSPANG00000004187 Papio anubis ENSPANG00000004187 I
HES2 Otolemur garnettii ENSOGAG00000024214 I
ENSMPUG00000006870 Mustela putorius furo ENSMPUG00000006870 I
HES2 Macaca mulatta ENSMMUG00000022882 I
HES2 Gorilla gorilla ENSGGOG00000001846 I
HES2 Callithrix jacchus ENSCJAG00000000166 I
ENSONIG00000002077 Oreochromis niloticus ENSONIG00000002077 N
hes2.2 Oryzias latipes ENSORLG00000004275 N
ENSLOCG00000005083 Lepisosteus oculatus ENSLOCG00000005083 N
ENSPFOG00000011221 Poecilia formosa ENSPFOG00000011221 N
ENSGMOG00000015330 Gadus morhua ENSGMOG00000015330 N
hes2.2 Gasterosteus aculeatus ENSGACG00000006470 N
HES2 Tetraodon nigroviridis ENSTNIG00000011986 N
HES2 Takifugu rubripes ENSTRUG00000000980 N
HES2 Takifugu rubripes ENSTRUG00000015206 N
ENSXMAG00000018649 Xiphophorus maculatus ENSXMAG00000018649 N