MTR_2g031870 (Medicago truncatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 MTR_2g031870 T274730_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TRB1
M01070_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Sullivan et al.(2014)
pTH7117 		0.758 0.872
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.732 0.851
TRB2
M02314_2.00 		Arabidopsis thaliana
WRMCCTAR
YTAGGKYW		 PBM
Weirauch et al.(2014)
pTH7094 		0.711 0.787
TRB2
M01083_2.00 		Arabidopsis thaliana
HRMCCTAR
YTAGGKYD		 PBM
Sullivan et al.(2014)
pTH7260 		0.711 0.787
TRB2
M07157_2.00 		Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN
NDDWTTAGGGYWWNDDDDD		 Dap-seq
OMalley et al.(2016)
TBP3_col_a 		0.711 0.787
TRB2
M07158_2.00 		Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH
DRDTTAGGGYTWNDDDHBD		 Dap-seq
OMalley et al.(2016)
TBP3_colamp_a 		0.711 0.787
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.699 0.787
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.666 0.723
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.666 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KEH37110 Myb 5 57
KEH37111 Myb 5 40

Links

Other Myb/SANT family TFs
Other Medicago truncatula TFs

221 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh_scip_prom.28083.954 Phytophthora lateralis fgenesh_scip_prom.28083.954 N
fgenesh_scip_prom.46568.3285 Phytophthora kernoviae fgenesh_scip_prom.46568.3285 N
HpaG807298 Hyaloperonospora arabidopsidis HpaG807298 N
maker-pag1_scaffold_589-snap-gene-0.14 Pythium aphanidermatum maker-pag1_scaffold_589-snap-gene-0.14 N
maker-par_contig_1670-fgenesh-gene-0.2 Pythium arrhenomanes maker-par_contig_1670-fgenesh-gene-0.2 N
maker-pir_contig_1290-snap-gene-0.2 Pythium irregulare maker-pir_contig_1290-snap-gene-0.2 N
Phyra84384 Phytophthora ramorum Phyra84384 N
Physo138557 Phytophthora sojae Physo138557 N
PITG_10557 Phytophthora infestans PITG_10557 N
PITG_10558 Phytophthora infestans PITG_10558 N
PYU1_G006571 Pythium ultimum PYU1_G006571 N
estExt_fgenesh1_kg.C_40161 Phytophthora capsici estExt_fgenesh1_kg.C_40161 N