OGLUM01G03980 (Oryza glumaepatula)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 OGLUM01G03980 T275627_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.716 0.739
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.716 0.739
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.708 0.739
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.667 0.717
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.667 0.717
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.667 0.717
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.667 0.696
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.667 0.696
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.667 0.696
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.662 0.739
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.662 0.739
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM01G03980.1 Myb 32 77

Links

Other Myb/SANT family TFs
Other Oryza glumaepatula TFs

279 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.244250 Cucumis sativus Cucsa.244250 N
PK02558.1 Cannabis sativa PK02558.1 N
orange1.1g036935m.g Citrus sinensis orange1.1g036935m.g N
MDP0000819543 Malus domestica MDP0000819543 N
MDP0000155544 Malus domestica MDP0000155544 N
Gorai.002G007600 Gossypium raimondii Gorai.002G007600 N
evm.TU.supercontig_62.24 Carica papaya evm.TU.supercontig_62.24 N
Eucgr.G01458 Eucalyptus grandis Eucgr.G01458 N
Ciclev10030084m.g Citrus clementina Ciclev10030084m.g N
GLYMA01G45623 Glycine max GLYMA01G45623 N
cassava5848.m1 Manihot esculenta cassava5848.m1 N
Pm021351 Prunus mume Pm021351 N
Pm021349 Prunus mume Pm021349 N
Cla013266 Citrullus lanatus Cla013266 N
TCM_007038 Theobroma cacao TCM_007038 N
PRUPE_ppa026741m2g Prunus persica PRUPE_ppa026741m2g N
PRUPE_ppa021390mg Prunus persica PRUPE_ppa021390mg N
POPTR_0018s13750 Populus trichocarpa POPTR_0018s13750 N