ORUFI02G29430 (Oryza rufipogon)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 ORUFI02G29430 T276904_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.909 0.978
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.901 0.957
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.901 0.957
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.901 0.957
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.901 0.957
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.901 0.957
RVE6
M01081_2.00 		Arabidopsis thaliana
AATATCTD
HAGATATT		 PBM
Sullivan et al.(2014)
pTH7151 		0.899 0.957
RVE6
M07138_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At5g52660_col_a 		0.899 0.957
RVE6
M07139_2.00 		Arabidopsis thaliana
NNNWAAATATCT
AGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a 		0.899 0.957
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.818 0.870
RVE5
M01079_2.00 		Arabidopsis thaliana
NWAATATCHN
NDGATATTWN		 PBM
Sullivan et al.(2014)
pTH7138 		0.803 0.913
RVE5
M07100_2.00 		Arabidopsis thaliana
NNAAAATATCT
AGATATTTTNN		 Dap-seq
OMalley et al.(2016)
At4g01280_col_a 		0.803 0.913
RVE5
M07101_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a 		0.803 0.913
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.706 0.696
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.670 0.652
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.670 0.652
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORUFI02G29430.1 Myb 37 82

Links

Other Myb/SANT family TFs
Other Oryza rufipogon TFs

334 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA03G19920 Oryza nivara ONIVA03G19920 N 0.000
Pavir.J05591 Panicum virgatum Pavir.J05591 N 0.000
TRIUR3_27498 Triticum urartu TRIUR3_27498 N 0.000
Traes_6DL_88259C187 Triticum aestivum Traes_6DL_88259C187 N 0.000
Traes_6BL_1392D6149 Triticum aestivum Traes_6BL_1392D6149 N 0.000
Traes_6AS_0D7F17F06 Triticum aestivum Traes_6AS_0D7F17F06 N 0.000
Si016284m.g Setaria italica Si016284m.g N 0.000
Sb04g005902 Sorghum bicolor Sb04g005902 N 0.000
OS02G0539600 Oryza sativa OS02G0539600 N 0.000
ORUFI02G20630 Oryza rufipogon ORUFI02G20630 N 0.000
ORGLA02G0167800 Oryza glaberrima ORGLA02G0167800 N 0.000
OPUNC02G17490 Oryza punctata OPUNC02G17490 N 0.000
Pavir.Ab01874 Panicum virgatum Pavir.Ab01874 N 0.000
OMERI02G19460 Oryza meridionalis OMERI02G19460 N 0.000
OLONG_005200 Oryza longistaminata OLONG_005200 N 0.000
OGLUM02G19870 Oryza glumaepatula OGLUM02G19870 N 0.000
OBART02G19580 Oryza barthii OBART02G19580 N 0.000
OB02G27300 Oryza brachyantha OB02G27300 N 0.000
MLOC_62598 Hordeum vulgare MLOC_62598 N 0.000
LPERR02G15710 Leersia perrieri LPERR02G15710 N 0.000
GRMZM2G326783 Zea mays GRMZM2G326783 N 0.000
GRMZM2G134439 Zea mays GRMZM2G134439 N 0.000
F775_27241 Aegilops tauschii F775_27241 N 0.000
BGIOSGA008381 Oryza indica BGIOSGA008381 N 0.000