POPTR_0008s12750 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s12750 T278351_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3
M02288_2.00 		Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN		 PBM
Weirauch et al.(2014)
pTH7125 		0.793 0.796
MYB4
M02303_2.00 		Arabidopsis thaliana
YACCWACY
RGTWGGTR		 PBM
Weirauch et al.(2014)
pTH7075 		0.771 0.774
MYB4
M07115_2.00 		Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN		 Dap-seq
OMalley et al.(2016)
MYB4_col200_a 		0.771 0.774
MYB55
M00876_2.00 		Arabidopsis thaliana
ACCWAMCD
HGKTWGGT		 PBM
Franco-Zorrilla et al.(2014)
MYB55 		0.690 0.710
MYB55
M07102_2.00 		Arabidopsis thaliana
HNNNHBYAMCWAMCD
HGKTWGKTRVDNNND		 Dap-seq
OMalley et al.(2016)
MYB55_colamp_a 		0.690 0.710
MYB55
M07103_2.00 		Arabidopsis thaliana
NYNYAMCHACCRHH
DDYGGTDGKTRNRN		 Dap-seq
OMalley et al.(2016)
MYB55_col 		0.690 0.710
Q2TCH0_PETHY
M11072_2.00 		Petunia x hybrida Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PH4_01 		0.687 0.720
MYB83
M01073_2.00 		Arabidopsis thaliana
YACCHACC
GGTDGGTR		 PBM
Sullivan et al.(2014)
pTH7140 		0.668 0.688
MYB83
M07066_2.00 		Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR		 Dap-seq
OMalley et al.(2016)
MYB83_col_a 		0.668 0.688
MYB83
M07067_2.00 		Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN		 Dap-seq
OMalley et al.(2016)
MYB83_colamp_a 		0.668 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s12750.1 Myb 13 60
POPTR_0008s12750.1 Myb 66 111

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

779 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DUXA Homo sapiens ENSG00000258873 D
ENSAMEG00000004960 Ailuropoda melanoleuca ENSAMEG00000004960 I
ACOM031533 Anopheles coluzzii ACOM031533 I
ENSMMUP00000010232 Macaca fascicularis ENSMMUP00000010232 I
ENSBTAP00000049813-D1 Bos grunniens ENSBTAP00000049813-D1 I
NEMVEDRAFT_v1g92500 Nematostella vectensis NEMVEDRAFT_v1g92500 I
NEMVEDRAFT_v1g92436 Nematostella vectensis NEMVEDRAFT_v1g92436 I
NEMVEDRAFT_v1g38792 Nematostella vectensis NEMVEDRAFT_v1g38792 I
DUXA Tursiops truncatus ENSTTRG00000014200 I
DUXA Pan troglodytes ENSPTRG00000028871 I
ENSPPYG00000010457 Pongo abelii ENSPPYG00000010457 I
ENSPANG00000009357 Papio anubis ENSPANG00000009357 I
DUXA Oryctolagus cuniculus ENSOCUG00000011331 I
ENSOARG00000003446 Ovis aries ENSOARG00000003446 I
DUXA Macaca mulatta ENSMMUG00000007788 I
ENSMICG00000015060 Microcebus murinus ENSMICG00000015060 I
ENSMICG00000006881 Microcebus murinus ENSMICG00000006881 I
DUXA Microcebus murinus ENSMICG00000006042 I
DUXA Loxodonta africana ENSLAFG00000030167 I
DUXA Gorilla gorilla ENSGGOG00000005650 I
DUXA Felis catus ENSFCAG00000007545 I
DUXA Equus caballus ENSECAG00000021112 I
ENSDNOG00000049160 Dasypus novemcinctus ENSDNOG00000049160 I
ENSDNOG00000046863 Dasypus novemcinctus ENSDNOG00000046863 I
ENSDNOG00000025505 Dasypus novemcinctus ENSDNOG00000025505 I
ENSCJAG00000032154 Callithrix jacchus ENSCJAG00000032154 I
ENSCJAG00000031259 Callithrix jacchus ENSCJAG00000031259 I
ENSCJAG00000021948 Callithrix jacchus ENSCJAG00000021948 I
DUXA Canis familiaris ENSCAFG00000002431 I
ADAC001343 Anopheles darlingi ADAC001343 N
ASTEI04565 Anopheles stephensi ASTEI04565 N