POPTR_0010s24710 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s24710 T278405_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G04760
M02304_2.00 		Arabidopsis thaliana
NDGATAAGGN
NCCTTATCHN		 PBM
Weirauch et al.(2014)
pTH7079 		0.681 0.756
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s24710.1 Myb 21 66
POPTR_0010s24710.1 Myb 129 176

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.681
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.852
MDP0000289018 Malus domestica MDP0000289018 I 0.667
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.676
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.698
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.681
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.681
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.661
Pm017050 Prunus mume Pm017050 I 0.667
Ca_05454 Cicer arietinum Ca_05454 I 0.699
TCM_041160 Theobroma cacao TCM_041160 I 0.735
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I 0.681
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.667
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.680
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.680
Bra009432 Brassica rapa Bra009432 I 0.661
Bo9g178980 Brassica oleracea Bo9g178980 I 0.661
Bo3g002960 Brassica oleracea Bo3g002960 I 0.681
Cucsa.364590 Cucumis sativus Cucsa.364590 N 0.669
e_gw1.256.18.1 Physcomitrella patens e_gw1.256.18.1 N 0.681
gw1.13.182.1 Physcomitrella patens gw1.13.182.1 N 0.681
mgf016380m Mimulus guttatus mgf016380m N 0.671
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N 0.734
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N 0.677
Lus10041088.g Linum usitatissimum Lus10041088.g N 0.667
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N 0.663