Sb01g012460 (Sorghum bicolor)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Sb01g012460 T279094_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.691 0.630
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.691 0.630
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb01g012460.1 Myb 26 71

Links

Other Myb/SANT family TFs
Other Sorghum bicolor TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CCA1 Arabidopsis thaliana AT2G46830 D 0.691
AMTR_s00001p00272270 Amborella trichopoda AMTR_s00001p00272270 I 0.666
OBART05G04370 Oryza barthii OBART05G04370 I 0.785
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I 0.785
OMERI05G04320 Oryza meridionalis OMERI05G04320 I 0.785
ONIVA05G04710 Oryza nivara ONIVA05G04710 I 0.793
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I 0.793
OS05G0162800 Oryza sativa OS05G0162800 I 0.793
CCA1 Arabidopsis lyrata scaffold_403655.1 I 0.691
Si038786m.g Setaria italica Si038786m.g I 0.852
Traes_1BS_24DBD38A8 Triticum aestivum Traes_1BS_24DBD38A8 I 0.681
TRIUR3_24634 Triticum urartu TRIUR3_24634 I 0.681
EuGene.0400010070 Ostreococcus RCC809 EuGene.0400010070 I 0.662
gw1.9.308.1 Chlorella NC64A gw1.9.308.1 I 0.670
Bostr.25993s0083 Boechera stricta Bostr.25993s0083 I 0.691
Cagra.0050s0017 Capsella grandiflora Cagra.0050s0017 I 0.691
Carubv10022831m.g Capsella rubella Carubv10022831m.g I 0.691
Thhalv10007028m.g Eutrema salsugineum Thhalv10007028m.g I 0.666
OB05G14050 Oryza brachyantha OB05G14050 I 0.769
BGIOSGA018757 Oryza indica BGIOSGA018757 I 0.793
Bo3g001090 Brassica oleracea Bo3g001090 I 0.673
Bo4g006930 Brassica oleracea Bo4g006930 I 0.697
Bo5g002760 Brassica oleracea Bo5g002760 I 0.666
Bra004503 Brassica rapa Bra004503 I 0.697
Bra030496 Brassica rapa Bra030496 I 0.676
Bra033291 Brassica rapa Bra033291 I 0.666
BRADI2G34670 Brachypodium distachyon BRADI2G34670 I 0.786
estExt_fgenesh1_pg.C_190109 Bigelowiella natans estExt_fgenesh1_pg.C_190109 I 0.667
F775_22448 Aegilops tauschii F775_22448 I 0.675
GRMZM2G115070 Zea mays GRMZM2G115070 I 0.891
LPERR05G03900 Leersia perrieri LPERR05G03900 I 0.699
MLOC_5590 Hordeum vulgare MLOC_5590 I 0.681
OBART05G04360 Oryza barthii OBART05G04360 I 0.759
GRMZM2G415077 Zea mays GRMZM2G415077 N 0.860
Pavir.J12412 Panicum virgatum Pavir.J12412 N 0.693
e_gw1.06.00.251.1 Ostreococcus tauri e_gw1.06.00.251.1 N 0.676