CCA1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_403655.1 T279392_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CCA1
M00875_2.00 		Arabidopsis thaliana
NDNRWATCN
NGATWYNHN		 PBM
Franco-Zorrilla et al.(2014)
CCA1 		0.909 1.000
CCA1
M11039_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CCA1_Q5 		0.909 1.000
OS08G0157600
M02330_2.00 		Oryza sativa
DNRTATCHN
NDGATAYNH		 PBM
Weirauch et al.(2014)
pTH7793 		0.863 0.891
LHY
M06997_2.00 		Arabidopsis thaliana
NWAAATATCT
AGATATTTWN		 Dap-seq
OMalley et al.(2016)
LHY1_col_a 		0.836 0.870
LHY
M06998_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LHY1_colamp_a 		0.836 0.870
RVE7
M01069_2.00 		Arabidopsis thaliana
NDHRWATCNN
NNGATWYDHN		 PBM
Sullivan et al.(2014)
pTH7081 		0.744 0.739
RVE7
M02286_2.00 		Arabidopsis thaliana
NDARTATCH
DGATAYTHN		 PBM
Weirauch et al.(2014)
pTH7277 		0.744 0.739
RVE7L
M07071_2.00 		Arabidopsis thaliana
NNNNWAAATATCWNN
NNWGATATTTWNNNN		 Dap-seq
OMalley et al.(2016)
AT3G10113_col_a 		0.744 0.739
RVE7
M07008_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
EPR1_colamp_a 		0.744 0.739
RVE7
M07009_2.00 		Arabidopsis thaliana
NWAAATATCTHN
NDAGATATTTWN		 Dap-seq
OMalley et al.(2016)
EPR1_col 		0.744 0.739
RVE1
M00879_2.00 		Arabidopsis thaliana
AAATATCT
AGATATTT		 PBM
Franco-Zorrilla et al.(2014)
RVE1 		0.738 0.804
RVE1
M07128_2.00 		Arabidopsis thaliana
NNNWAAATATCTNN
NNAGATATTTWNNN		 Dap-seq
OMalley et al.(2016)
RVE1_col_a 		0.738 0.804
RVE1
M07129_2.00 		Arabidopsis thaliana
NNWAATATCW
WGATATTWNN		 Dap-seq
OMalley et al.(2016)
RVE1_colamp_a 		0.738 0.804
PK08316.1
M02350_2.00 		Cannabis sativa
NNNRWATCNN
NNGATWYNNN		 PBM
Weirauch et al.(2014)
pTH9488 		0.730 0.783
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_403655.1 Myb 24 69

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT3G60670 Arabidopsis thaliana AT3G60670 N
Bo4g104880 Brassica oleracea Bo4g104880 N
Bra007550 Brassica rapa Bra007550 N
Bra014478 Brassica rapa Bra014478 N
fgenesh2_kg.5__2532__AT3G60670.1 Arabidopsis lyrata fgenesh2_kg.5__2532__AT3G60670.1 N
TCM_005554 Theobroma cacao TCM_005554 N
VIT_15s0048g00580 Vitis vinifera VIT_15s0048g00580 N
Bostr.13158s0066 Boechera stricta Bostr.13158s0066 N
Cagra.6011s0013 Capsella grandiflora Cagra.6011s0013 N
Carubv10019494m.g Capsella rubella Carubv10019494m.g N
evm.TU.supercontig_145.1 Carica papaya evm.TU.supercontig_145.1 N
Gorai.001G174900 Gossypium raimondii Gorai.001G174900 N
Gorai.004G163500 Gossypium raimondii Gorai.004G163500 N
Gorai.007G089600 Gossypium raimondii Gorai.007G089600 N
Thhalv10006374m.g Eutrema salsugineum Thhalv10006374m.g N