Solyc03g112890.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc03g112890.1 T280080_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.674 0.806
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.674 0.806
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.664 0.774
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.664 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc03g112890.1.1 Myb 158 204
Solyc03g112890.1.1 Myb 210 255

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ONIVA06G07020 Oryza nivara ONIVA06G07020 N 0.000
Pavir.Fb00845 Panicum virgatum Pavir.Fb00845 N 0.000
TRIUR3_03303 Triticum urartu TRIUR3_03303 N 0.000
Traes_7DS_A234A13E1 Triticum aestivum Traes_7DS_A234A13E1 N 0.000
Traes_7BS_9D1E05CB7 Triticum aestivum Traes_7BS_9D1E05CB7 N 0.000
Si014404m.g Setaria italica Si014404m.g N 0.000
Sb07g006170 Sorghum bicolor Sb07g006170 N 0.000
Sb03g026620 Sorghum bicolor Sb03g026620 N 0.000
OS06G0194400 Oryza sativa OS06G0194400 N 0.000
ORUFI06G06290 Oryza rufipogon ORUFI06G06290 N 0.000
ORGLA06G0055700 Oryza glaberrima ORGLA06G0055700 N 0.000
BGIOSGA022464 Oryza indica BGIOSGA022464 N 0.000
OMERI06G07230 Oryza meridionalis OMERI06G07230 N 0.000
OLONG_013315 Oryza longistaminata OLONG_013315 N 0.000
OGLUM06G06330 Oryza glumaepatula OGLUM06G06330 N 0.000
OB06G15600 Oryza brachyantha OB06G15600 N 0.000
MLOC_76431 Hordeum vulgare MLOC_76431 N 0.000
LPERR06G05590 Leersia perrieri LPERR06G05590 N 0.000
GRMZM2G173321 Zea mays GRMZM2G173321 N 0.000
GRMZM2G106673 Zea mays GRMZM2G106673 N 0.000
F775_06135 Aegilops tauschii F775_06135 N 0.000
BRADI1G45517 Brachypodium distachyon BRADI1G45517 N 0.000