MYB118 (Arabidopsis thaliana)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 AT3G27785 T266454_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
MYB98 is a member of the R2R3-MYB gene family, the members of which likely encode transcription factors. Within an ovule, MYB98 is expressed exclusively in the synergid cells, and mutations in this gene affect the female gametophyte specifically. myb98 female gametophytes are affected in two unique features of the synergid cell, pollen tube guidance and the filiform apparatus, but are otherwise normal. This suggests that MYB98 controls the development of specific features within the synergid cell during female gametophyte development. MYB98 also is expressed in trichomes and endosperm. Homozygous myb98 mutants exhibit no sporophytic defects, including trichome and endosperm defects.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00		 Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a		 (Direct) (Direct)
MYB118
M07088_2.00		 Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G27785.1 Myb 189 235
AT3G27785.1 Myb 241 286

Links

Other Myb/SANT family TFs
Other Arabidopsis thaliana TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.875
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.853
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.837
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.837
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.824
Bo2g144970 Brassica oleracea Bo2g144970 I 0.823
Bra025299 Brassica rapa Bra025299 I 0.811
Bra033027 Brassica rapa Bra033027 I 0.807
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.777
TCM_016909 Theobroma cacao TCM_016909 I 0.763
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.748
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.744
29917.m001977 Ricinus communis 29917.m001977 I 0.744
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.744
Cla010586 Citrullus lanatus Cla010586 I 0.742
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.738
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.733
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.730
Pm015681 Prunus mume Pm015681 I 0.730
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.730
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.722
mgf024290m Mimulus guttatus mgf024290m I 0.721
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.717
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.713
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.708
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.708
Pm024743 Prunus mume Pm024743 I 0.708
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.708
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.708
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.708
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.708
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.708
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.704
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.702
MDP0000199939 Malus domestica MDP0000199939 I 0.701
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.696
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.686
Cla019490 Citrullus lanatus Cla019490 I 0.686
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.685
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.683
MDP0000215359 Malus domestica MDP0000215359 I 0.683
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.683
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.683
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.683
TCM_012087 Theobroma cacao TCM_012087 I 0.683
30147.m013937 Ricinus communis 30147.m013937 I 0.683
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.683
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.683
Ca_17294 Cicer arietinum Ca_17294 I 0.682
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.680
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.680
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.674
Ca_17087 Cicer arietinum Ca_17087 I 0.674
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.673
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.672
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.670
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.669
Ca_07482 Cicer arietinum Ca_07482 I 0.668
Pm000541 Prunus mume Pm000541 I 0.667
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.667
MDP0000319656 Malus domestica MDP0000319656 I 0.667
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.667
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.664
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.664
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.661