Bra025299 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra025299 T267980_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.811 0.860
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.811 0.860
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.669 0.774
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.669 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025299.1-P Myb 226 272
Bra025299.1-P Myb 278 323

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

106 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.847
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.838
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.813
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.813
MYB118 Arabidopsis thaliana AT3G27785 D 0.811
Bo2g144970 Brassica oleracea Bo2g144970 I 0.796
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.787
TCM_016909 Theobroma cacao TCM_016909 I 0.784
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.772
Bra033027 Brassica rapa Bra033027 I 0.771
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.756
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.749
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.739
Pm024743 Prunus mume Pm024743 I 0.739
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.739
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.739
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.733
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.731
Cla010586 Citrullus lanatus Cla010586 I 0.730
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.728
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.728
Cla019490 Citrullus lanatus Cla019490 I 0.727
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.727
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.727
mgf024290m Mimulus guttatus mgf024290m I 0.726
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.725
Pm015681 Prunus mume Pm015681 I 0.725
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.724
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.724
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.724
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.719
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.718
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.718
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.717
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.716
TCM_012087 Theobroma cacao TCM_012087 I 0.715
30147.m013937 Ricinus communis 30147.m013937 I 0.715
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.715
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.715
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.715
MDP0000215359 Malus domestica MDP0000215359 I 0.715
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.715
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.714
29917.m001977 Ricinus communis 29917.m001977 I 0.714
Ca_17294 Cicer arietinum Ca_17294 I 0.713
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.706
Ca_17087 Cicer arietinum Ca_17087 I 0.705
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.702
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.701
Ca_07482 Cicer arietinum Ca_07482 I 0.700
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.696
Si039046m.g Setaria italica Si039046m.g I 0.694
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.694
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.694
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.692
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.692
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.691
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.690
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.688
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.686
MDP0000199939 Malus domestica MDP0000199939 I 0.680
Lus10005864.g Linum usitatissimum Lus10005864.g I 0.676
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.675
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.675
F775_22212 Aegilops tauschii F775_22212 I 0.673
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.673
OB06G13860 Oryza brachyantha OB06G13860 I 0.673
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.673
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.673
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.673
Bo3g157300 Brassica oleracea Bo3g157300 I 0.672
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.672
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.670
MYB98 Arabidopsis thaliana AT4G18770 D 0.669
Bo1g019910 Brassica oleracea Bo1g019910 I 0.669
Bra013346 Brassica rapa Bra013346 I 0.669
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.669
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.669
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.669
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.669
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.668
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.667
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.665
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.665
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.664
OBART06G04170 Oryza barthii OBART06G04170 I 0.664
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.664
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.664
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.664
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.664
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.664
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.664
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.664
OS06G0162700 Oryza sativa OS06G0162700 I 0.664
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.664
Pm000541 Prunus mume Pm000541 I 0.664
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.664
MDP0000319656 Malus domestica MDP0000319656 I 0.664
Bra020992 Brassica rapa Bra020992 I 0.663
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.663
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.662
Bo7g106240 Brassica oleracea Bo7g106240 I 0.661
GLYMA05G08761 Glycine max GLYMA05G08761 N 0.661
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.661
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N 0.661
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N 0.661