29917.m001977 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 29917.m001977 T283831_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB118
M07087_2.00 		Arabidopsis thaliana
DHWDHRDMCGTTACDWW
WWHGTAACGKHYDHWDH		 Dap-seq
OMalley et al.(2016)
MYB118_col_a 		0.744 0.849
MYB118
M07088_2.00 		Arabidopsis thaliana
DWWWYGTAACGKHYR
YRDMCGTTACRWWWH		 Dap-seq
OMalley et al.(2016)
MYB118_colamp_a 		0.744 0.849
MYB98
M02301_2.00 		Arabidopsis thaliana
NNGTAACGKMN
NKMCGTTACNN		 PBM
Weirauch et al.(2014)
pTH8148 		0.666 0.785
MYB98
M07108_2.00 		Arabidopsis thaliana
DWWWHGTAACGKWHD
HDWMCGTTACDWWWH		 Dap-seq
OMalley et al.(2016)
MYB98_col_a 		0.666 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29917.m001977 Myb 75 121
29917.m001977 Myb 127 172

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.824
Cla010586 Citrullus lanatus Cla010586 I 0.817
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I 0.815
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.777
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.772
30147.m013937 Ricinus communis 30147.m013937 I 0.765
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I 0.764
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.763
Pm015681 Prunus mume Pm015681 I 0.755
MYB118 Arabidopsis thaliana AT3G27785 D 0.744
MYB118 Arabidopsis lyrata fgenesh2_kg.5__560__AT3G27785.1 I 0.744
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.741
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.741
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.741
VIT_14s0066g01010 Vitis vinifera VIT_14s0066g01010 I 0.727
Bostr.0556s0457 Boechera stricta Bostr.0556s0457 I 0.726
Cagra.11216s0002 Capsella grandiflora Cagra.11216s0002 I 0.726
Carubv10018693m.g Capsella rubella Carubv10018693m.g I 0.726
Thhalv10005564m.g Eutrema salsugineum Thhalv10005564m.g I 0.726
MDP0000199939 Malus domestica MDP0000199939 I 0.725
Cla019490 Citrullus lanatus Cla019490 I 0.724
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.724
Gorai.001G263600 Gossypium raimondii Gorai.001G263600 I 0.722
TCM_012087 Theobroma cacao TCM_012087 I 0.721
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.721
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.721
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.720
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.717
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.717
Bra025299 Brassica rapa Bra025299 I 0.714
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.714
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.714
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.710
TCM_016909 Theobroma cacao TCM_016909 I 0.699
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.696
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.696
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.696
Pm024743 Prunus mume Pm024743 I 0.696
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.696
Ciclev10017526m.g Citrus clementina Ciclev10017526m.g I 0.696
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.696
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.696
MDP0000215359 Malus domestica MDP0000215359 I 0.696
orange1.1g044021m.g Citrus sinensis orange1.1g044021m.g I 0.696
GLYMA16G07927 Glycine max GLYMA16G07927 I 0.693
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.693
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.693
mgf024290m Mimulus guttatus mgf024290m I 0.692
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.691
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.691
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.690
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.690
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.689
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.688
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.687
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N 0.686
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.686
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I 0.686
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.684
Si039046m.g Setaria italica Si039046m.g I 0.683
F775_22212 Aegilops tauschii F775_22212 I 0.679
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.679
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.679
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.679
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.678
Bo2g144970 Brassica oleracea Bo2g144970 I 0.676
Bra033027 Brassica rapa Bra033027 I 0.676
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.672
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I 0.671
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.670
OB06G13860 Oryza brachyantha OB06G13860 I 0.670
Ca_17294 Cicer arietinum Ca_17294 I 0.670
Bo3g157300 Brassica oleracea Bo3g157300 I 0.669
Bra020992 Brassica rapa Bra020992 I 0.669
evm.TU.supercontig_108.29 Carica papaya evm.TU.supercontig_108.29 I 0.669
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.669
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.668
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.667
MYB98 Arabidopsis thaliana AT4G18770 D 0.666
Bo1g019910 Brassica oleracea Bo1g019910 I 0.666
Bra013346 Brassica rapa Bra013346 I 0.666
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.666
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.666
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.666
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.666
GLYMA19G13923 Glycine max GLYMA19G13923 I 0.663
Lus10013084.g Linum usitatissimum Lus10013084.g N 0.663
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.662
OBART12G04480 Oryza barthii OBART12G04480 I 0.662
OBART12G04500 Oryza barthii OBART12G04500 I 0.662
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.662
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.662
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.662
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.662
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.662
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.662
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.661
OBART06G04170 Oryza barthii OBART06G04170 I 0.661
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.661
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.661
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.661
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.661
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.661
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.661
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.661
OS06G0162700 Oryza sativa OS06G0162700 I 0.661
Ca_19427 Cicer arietinum Ca_19427 I 0.661
Lus10018220.g Linum usitatissimum Lus10018220.g N 0.661